RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 ARL9Q6T311 187 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 DRAM2Q6UX65 266 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 LRRN1Q6UXK5 716 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 UNQ6126/PRO20091Q6UXV3 157 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 COLCA1Q6ZS62 124 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SYS1Q8N2H4 156 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 STX19Q8N4C7 294 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 PAQR4Q8N4S7 273 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-204ENST00000452182 NUP37Q8NFH4 326 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SNX33Q8WV41 574 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SLC7A6Q92536 515 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 PIK3IP1Q96FE7 263 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 C4orf45Q96LM5 186 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SIGLEC11Q96RL6 698 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 ELOVL3Q9HB03 270 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 TBCCD1Q9NVR7 557 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 PAK1IP1Q9NWT1 392 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SLCO1C1Q9NYB5 712 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 MRM2Q9UI43 246 aaKnown RBP10.01□□□□□ -0.81
SCN9A-204ENST00000452182 EXOSC1Q9Y3B2 195 aaKnown RBP10.01□□□□□ -0.81
SCN9A-204ENST00000452182 RNF115Q9Y4L5 304 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 SPEF1Q9Y4P9 236 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 LRP12Q9Y561 859 aa10.01□□□□□ -0.81
SCN9A-204ENST00000452182 METTL15A6NJ78 407 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 PTGES3LE9PB15 166 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ATP6V1G2-DDX39BF2Z307 99 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 F5H5K5 113 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 M0R135 149 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 MRPS14O60783 128 aaKnown RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 ABHD16AO95870 558 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 KRT8P05787 483 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ADRA2AP08913 450 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 DBHP09172 617 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ACSM4P0C7M7 580 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 MYL12AP19105 171 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 CCNOP22674 350 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 NR4A1P22736 598 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 TUBG1P23258 451 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 HSD11B1P28845 292 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 RAD52P43351 418 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 RIDAP52758 137 aaKnown RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 UCP2P55851 309 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 NKX6-1P78426 367 aaPredicted RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 GALK2Q01415 458 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 MVKQ03426 396 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ADAM5Q6NVV9 412 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SPATC1Q76KD6 591 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 LHFPL3Q86UP9 236 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 HAVCR2Q8TDQ0 301 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 C14orf79Q96F83 325 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF799Q96GE5 643 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 DOK1Q99704 481 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ALG8Q9BVK2 526 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 C1QTNF5Q9BXJ0 243 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 CDCA4Q9BXL8 241 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 TUBG2Q9NRH3 451 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 EIF3KQ9UBQ5 218 aaKnown RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 IKZF2Q9UKS7 526 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 TRIM64A6NGJ6 449 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ACOD1A6NK06 481 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SHISA9B4DS77 424 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SMPD2O60906 423 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 CTAG2O75638 210 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 TACSTD2P09758 323 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 C21orf33P30042 268 aaPredicted RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 WNT5AP41221 380 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 PSMA6P60900 246 aaKnown RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 HGFACQ04756 655 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SPOCK1Q08629 439 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 LIPNQ5VXI9 398 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SLC22A25Q6T423 547 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 PRSS45Q7RTY3 260 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF101Q8IZC7 436 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 APOBEC3DQ96AK3 386 aaPredicted RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 COG8Q96MW5 612 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 BCL2L14Q9BZR8 327 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 SP140LQ9H930 580 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 CHCHD3Q9NX63 227 aaKnown RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 CAB39Q9Y376 341 aaPredicted RBP10□□□□□ -0.81
SCN9A-204ENST00000452182 GRIP1Q9Y3R0 1128 aa10□□□□□ -0.81
SCN9A-204ENST00000452182 DCHS2Q6V1P9 2916 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 TMEM129A0AVI4 362 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 PSMD9O00233 223 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 RGS10O43665 173 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 SRSF10O75494 262 aaKnown RBP9.99□□□□□ -0.81
SCN9A-204ENST00000452182 COL8A1P27658 744 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 GLRXP35754 106 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 CX3CR1P49238 355 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 ETV1P50549 477 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 PRKXP51817 358 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 OR12D2P58182 307 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 MRPL28Q13084 256 aaKnown RBP9.99□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF829Q3KNS6 432 aaPredicted RBP9.99□□□□□ -0.81
SCN9A-204ENST00000452182 KCTD21Q4G0X4 260 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF704Q6ZNC4 412 aaPredicted RBP9.99□□□□□ -0.81
SCN9A-204ENST00000452182 PRSS48Q7RTY5 328 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 FAM220AQ7Z4H9 259 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF295-AS1Q8N0V1 137 aa9.99□□□□□ -0.81
SCN9A-204ENST00000452182 ZNF283Q8N7M2 679 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms