RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMPRSS11AQ6ZMR5 421 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 FAM220AQ7Z4H9 259 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 PAQR4Q8N4S7 273 aaPredicted RBP13.66□□□□□ -0.22
USP40-206ENST00000443711 YIPF7Q8N8F6 280 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ZNF649Q9BS31 505 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 MRM2Q9UI43 246 aaKnown RBP13.66□□□□□ -0.22
USP40-206ENST00000443711 CAB39Q9Y376 341 aaPredicted RBP13.66□□□□□ -0.22
USP40-206ENST00000443711 A6NNC1 897 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 M0R135 149 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 MRPS14O60783 128 aaKnown RBP13.65□□□□□ -0.22
USP40-206ENST00000443711 ABHD16AO95870 558 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 ADRA2AP08913 450 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 PCSK6P29122 969 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 C21orf33P30042 268 aaPredicted RBP13.65□□□□□ -0.22
USP40-206ENST00000443711 CHN2P52757 468 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 TP53I3Q53FA7 332 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 RNLSQ5VYX0 342 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 SLC22A25Q6T423 547 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 SYS1Q8N2H4 156 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 KLHL36Q8N4N3 616 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 ZNF799Q96GE5 643 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 C4orf45Q96LM5 186 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 CDCA4Q9BXL8 241 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 SP140LQ9H930 580 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 GNG8Q9UK08 70 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 RNF115Q9Y4L5 304 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 ABCA4P78363 2273 aa13.65□□□□□ -0.22
USP40-206ENST00000443711 ATP6V1G2-DDX39BF2Z307 99 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 J3QLW9 94 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ICMTO60725 284 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ZNF19P17023 458 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 NR4A1P22736 598 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 COL8A1P27658 744 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 LOXP28300 417 aaPredicted RBP13.64□□□□□ -0.23
USP40-206ENST00000443711 RAD52P43351 418 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 SLC6A9P48067 706 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 CX3CR1P49238 355 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 UCP2P55851 309 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 OR12D2P58182 307 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ZNF829Q3KNS6 432 aaPredicted RBP13.64□□□□□ -0.23
USP40-206ENST00000443711 PRSS48Q7RTY5 328 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 SGCDQ92629 289 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 TMEM204Q9BSN7 226 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 CCDC90BQ9GZT6 254 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 TBCCD1Q9NVR7 557 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 CLEC2DQ9UHP7 191 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ERGIC3Q9Y282 383 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ATP23Q9Y6H3 246 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 ADGRG4Q8IZF6 3080 aa13.64□□□□□ -0.23
USP40-206ENST00000443711 UTP20O75691 2785 aaKnown RBP13.64□□□□□ -0.23
USP40-206ENST00000443711 TMEM269A0A1B0GVZ9 245 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 ACOD1A6NK06 481 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 J3QW42 95 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 MYL12BO14950 172 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 TNFAIP8O95379 198 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 MT-ND2P03891 347 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 MT-ND5P03915 603 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 LCATP04180 440 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 WNT5AP41221 380 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 PSMA6P60900 246 aaKnown RBP13.63□□□□□ -0.23
USP40-206ENST00000443711 HGFACQ04756 655 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 SPOCK1Q08629 439 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 KCTD21Q4G0X4 260 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 LIPNQ5VXI9 398 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 ADAM5Q6NVV9 412 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 COLCA1Q6ZS62 124 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 NAA40Q86UY6 237 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 C1orf174Q8IYL3 243 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 OR52N1Q8NH53 320 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 APOBEC3DQ96AK3 386 aaPredicted RBP13.63□□□□□ -0.23
USP40-206ENST00000443711 C4orf36Q96KX1 117 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 COG8Q96MW5 612 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 HS3ST6Q96QI5 342 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 NR1H4Q96RI1 486 aaPredicted RBP13.63□□□□□ -0.23
USP40-206ENST00000443711 SIGLEC11Q96RL6 698 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 DOK1Q99704 481 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 C1QTNF5Q9BXJ0 243 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 BCL2L14Q9BZR8 327 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 POU2F3Q9UKI9 436 aa13.63□□□□□ -0.23
USP40-206ENST00000443711 TMEM129A0AVI4 362 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 FAM221AA4D161 298 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 SHISA9B4DS77 424 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 RPP14O95059 124 aaKnown RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 ANXA2P07355 339 aaKnown RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 FAM157BP0CG42 384 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 TUBG1P23258 451 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 MMP16P51512 607 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 GBX2P52951 348 aaPredicted RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 ZNF121P58317 390 aaPredicted RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 MRPL28Q13084 256 aaKnown RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 IRF3Q14653 427 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 OR2G6Q5TZ20 316 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 ZNF704Q6ZNC4 412 aaPredicted RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 NANOGP1Q8N7R0 232 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 NUP37Q8NFH4 326 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 OR5L1Q8NGL2 311 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 ABHD4Q8TB40 342 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 HAVCR2Q8TDQ0 301 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 SPRYD4Q8WW59 207 aaPredicted RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 PGAM5Q96HS1 289 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms