RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MSL2Q9HCI7 577 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 PTTG3PQ9NZH4 202 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 KIF17Q9P2E2 1029 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 COMMD3-BMI1R4GMX3 469 aa12.93□□□□□ -0.34
LIMS3-201ENST00000437679 LMX1BO60663 402 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 CIB2O75838 187 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 HMGN1P05114 100 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 ADH4P08319 380 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 SPARCP09486 303 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 ACSM4P0C7M7 580 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 CLUP10909 449 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 PAICSP22234 425 aaKnown RBP12.92□□□□□ -0.34
LIMS3-201ENST00000437679 TNFSF4P23510 183 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 RPS27P42677 84 aaKnown RBP12.92□□□□□ -0.34
LIMS3-201ENST00000437679 ENTPD1P49961 510 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 TPTEP56180 551 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 CDK5R2Q13319 367 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 HFEQ30201 348 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 KRTAP27-1Q3LI81 207 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 LYPD4Q6UWN0 246 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 HIPK1Q86Z02 1210 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF511Q8NB15 262 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 DNAJC9Q8WXX5 260 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 SPTSSAQ969W0 71 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 WDR76Q9H967 626 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 NTN4Q9HB63 628 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 PNRC2Q9NPJ4 139 aaKnown RBP12.92□□□□□ -0.34
LIMS3-201ENST00000437679 KCNS2Q9ULS6 477 aa12.92□□□□□ -0.34
LIMS3-201ENST00000437679 FAM183AA6NL82 134 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 CLDN25C9JDP6 229 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF593O00488 134 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-201ENST00000437679 TGFAP01135 160 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 LCATP04180 440 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 CD55P08174 381 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 TNFAIP6P98066 277 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-201ENST00000437679 CCNIQ14094 377 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 HLXQ14774 488 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-201ENST00000437679 TAF13Q15543 124 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 RSPO1Q2MKA7 263 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-201ENST00000437679 TEX30Q5JUR7 227 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 ACSM5Q6NUN0 579 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 FBXW12Q6X9E4 464 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 COLCA1Q6ZS62 124 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 DCXRQ7Z4W1 244 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 OR2Z1Q8NG97 314 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 OR5K1Q8NHB7 308 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 UTP4Q969X6 686 aaKnown RBP12.91□□□□□ -0.34
LIMS3-201ENST00000437679 HCAR1Q9BXC0 346 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 C1QTNF5Q9BXJ0 243 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 NARFLQ9H6Q4 476 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 MED20Q9H944 212 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 TMEM160Q9NX00 188 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 AP4S1Q9Y587 144 aa12.91□□□□□ -0.34
LIMS3-201ENST00000437679 PRR23D1E9PI22 279 aaPredicted RBP12.9□□□□□ -0.34
LIMS3-201ENST00000437679 M0R135 149 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 PRR23D2P0DMB1 279 aaPredicted RBP12.9□□□□□ -0.34
LIMS3-201ENST00000437679 SELEP16581 610 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 FASP25445 335 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 IL2RGP31785 369 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 SLC6A9P48067 706 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 SLC3A1Q07837 685 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 MALLQ13021 153 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 ATP6AP1Q15904 470 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 PCK2Q16822 640 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 CHRFAM7AQ494W8 412 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 LINC01590Q5TEZ4 76 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 OR2T2Q6IF00 324 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 OR5AS1Q8N127 324 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 LINC01356Q8N9X3 169 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 CLDND2Q8NHS1 167 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 CCL17Q92583 94 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF799Q96GE5 643 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 TIMD4Q96H15 378 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 PLEKHA8Q96JA3 519 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 ZNF582Q96NG8 517 aaPredicted RBP12.9□□□□□ -0.34
LIMS3-201ENST00000437679 COPS4Q9BT78 406 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 OR51V1Q9H2C8 321 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 PAPOLBQ9NRJ5 636 aaKnown RBP12.9□□□□□ -0.34
LIMS3-201ENST00000437679 CENPMQ9NSP4 180 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 DDX28Q9NUL7 540 aaKnown RBP12.9□□□□□ -0.34
LIMS3-201ENST00000437679 LPAR3Q9UBY5 353 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 CDC42EP3Q9UKI2 254 aa12.9□□□□□ -0.34
LIMS3-201ENST00000437679 G3V2T6 193 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 SURF4O15260 269 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 GLCEO94923 617 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 FCGR1AP12314 374 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 TNFRSF1AP19438 455 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 GSTT1P30711 240 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 CDK5Q00535 292 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 MVKQ03426 396 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 PLBD1Q6P4A8 553 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 FAHD1Q6P587 224 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 DRAM2Q6UX65 266 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 Q6ZR03 302 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 CCDC121Q6ZUS5 278 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 ERI1Q8IV48 349 aaKnown RBP12.89□□□□□ -0.35
LIMS3-201ENST00000437679 OR10S1Q8NGN2 331 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 OR6N2Q8NGY6 317 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 OR13G1Q8NGZ3 307 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 RAB1CQ92928 201 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms