RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GDI1P31150 447 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 MFSD4AQ8N468 514 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR2T10Q8NGZ9 312 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 GDF2Q9UK05 429 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 TRIP12Q14669 1992 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 NKX6-3A6NJ46 265 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 DSCR3O14972 297 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LRP3O75074 770 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TCN2P20062 427 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 UBE2IP63279 158 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 ACVR1Q04771 509 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ANGPTL5Q86XS5 388 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LILRA2Q8N149 483 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR8G5Q8NG78 346 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 CD99L2Q8TCZ2 262 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LHX3Q9UBR4 397 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ELF5Q9UKW6 265 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 CA11O75493 328 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 CDS2O95674 445 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 NME2P22392 152 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 CDK5R1Q15078 307 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ABHD17BQ5VST6 288 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ESPNLQ6ZVH7 1005 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LRP11Q86VZ4 500 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR4F5Q8NH21 305 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR4F4Q96R69 305 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 WDR77Q9BQA1 342 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 CA14Q9ULX7 337 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 A0A0B4J203 849 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TMEM88BA6NKF7 163 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TARM1B6A8C7 271 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SEC11BP0C7V7 166 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 EN2P19622 333 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 KIR2DL3P43628 341 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SHEQ5VZ18 495 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SLC35E3Q7Z769 313 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 PERPQ96FX8 193 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 CCDC74BQ96LY2 380 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SLIRPQ9GZT3 109 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 DCTN6O00399 190 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ARPC3O15145 178 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 HOXC11O43248 304 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 SIX6O95475 246 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 RHOBP62745 196 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 MRPL2Q5T653 305 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 RAET1LQ5VY80 246 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 VASNQ6EMK4 673 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TXNRD3NBQ6F5E7 133 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 CGB2Q6NT52 195 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 PRSS54Q6PEW0 395 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TOMM20LQ6UXN7 152 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ZBTB34Q8NCN2 500 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 DOK4Q8TEW6 326 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 HIF1ANQ9NWT6 349 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 GNG12Q9UBI6 72 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TRAPPC1Q9Y5R8 145 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 MAP1LC3B2A6NCE7 125 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 HNRNPA2B1P22626 353 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 FABP9Q0Z7S8 132 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 KIAA2026Q5HYC2 2103 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 TCEAL8Q8IYN2 117 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ANKLE1Q8NAG6 615 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 BVESQ8NE79 360 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 DNAJA3Q96EY1 480 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 FYTTD1Q96QD9 318 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 RBM24Q9BX46 236 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 ULBP2Q9BZM5 246 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 MAP1LC3BQ9GZQ8 125 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR51M1Q9H341 326 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LRRC3CA6NJW4 275 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 M0R2Z0 102 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ISLRO14498 428 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 OR7C1O76099 320 aaPredicted RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 SLCO2B1O94956 709 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 RPL7P18124 248 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 GABREP78334 506 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 Q6ZVU0 165 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ZNF547Q8IVP9 402 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 LPPQ93052 612 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 RBM14Q96PK6 669 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 SSTR4P31391 388 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 VIPR2P41587 438 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 PPP1R1CQ8WVI7 109 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SLC25A33Q9BSK2 321 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 SORBS1Q9BX66 1292 aaKnown RBP6.58□□□□□ -1.36
VPS53-204ENST00000437048 HS3ST2Q9Y278 367 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 ARAP2Q8WZ64 1704 aa6.58□□□□□ -1.36
VPS53-204ENST00000437048 A0A0U1RQK1 487 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 INHBBP09529 407 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SMIM17P0DL12 118 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CSNK1EP49674 416 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 SERF2P84101 59 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 Q6ZVL8 140 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 TSEN54Q7Z6J9 526 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 SCAMP5Q8TAC9 235 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 RAB6CQ9H0N0 254 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 RNF208Q9H0X6 261 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 HRASLSQ9HDD0 168 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 TRAV9-1A0A075B6T8 112 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 C1orf105O95561 183 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms