RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 GSX1Q9H4S2 264 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 H2AFY2Q9P0M6 372 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 N6AMT1Q9Y5N5 214 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 ORC6Q9Y5N6 252 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 PLSCR5A0PG75 271 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 C17orf100A8MU93 164 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 MT-ND5P03915 603 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 FOSL1P15407 271 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 SLC2A5P22732 501 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 MAGEB1P43366 347 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 SLC6A9P48067 706 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 PRKXP51817 358 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 PSG7Q13046 419 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 TSTQ16762 297 aaKnown RBP15.94■□□□□ 0.14
SHH-203ENST00000435425 PCK2Q16822 640 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 SLC35D3Q5M8T2 416 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 SHFQ7M4L6 423 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 TIGD4Q8IY51 512 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 PQLC1Q8N2U9 271 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 CBR4Q8N4T8 237 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 ST7LQ8TDW4 575 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 C10orf105Q8TEF2 133 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 UBASH3BQ8TF42 649 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 THEM6Q8WUY1 208 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 SPTSSAQ969W0 71 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 COX4I2Q96KJ9 171 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 COG8Q96MW5 612 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 ABHD6Q9BV23 337 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 MARCH7Q9H992 704 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 CR1P17927 2039 aa15.94■□□□□ 0.14
SHH-203ENST00000435425 ZNF878C9JN71 531 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 H3BSA7 217 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 M0R135 149 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 TPD52L2O43399 206 aaKnown RBP15.93■□□□□ 0.14
SHH-203ENST00000435425 SPRY3O43610 288 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 HPXP02790 462 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 ALPLP05186 524 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 MRPL3P09001 348 aaKnown RBP15.93■□□□□ 0.14
SHH-203ENST00000435425 CSF3P09919 207 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 ZNF81P51508 661 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 HCCSP53701 268 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 CCL8P80075 99 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 KRTAP27-1Q3LI81 207 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 TMEM163Q8TC26 289 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 ZNF799Q96GE5 643 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 AMELYQ99218 206 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 TEAD3Q99594 435 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 C9orf16Q9BUW7 83 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 GABARAPL3Q9BY60 117 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 MSL2Q9HCI7 577 aa15.93■□□□□ 0.14
SHH-203ENST00000435425 PURGQ9UJV8 347 aaKnown RBP15.93■□□□□ 0.14
SHH-203ENST00000435425 CCDC182A6NF36 153 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 NCR1O76036 304 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 TUBG1P23258 451 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 MMP15P51511 669 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 ALDH3A2P51648 485 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 PRSS12P56730 875 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 LCN1P1Q5VSP4 162 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 OR5AS1Q8N127 324 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 ZNF283Q8N7M2 679 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 HAVCR1Q96D42 359 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 KCNJ15Q99712 375 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 PIMREGQ9BSJ6 248 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 C1QTNF5Q9BXJ0 243 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 MYOZ1Q9NP98 299 aaPredicted RBP15.92■□□□□ 0.14
SHH-203ENST00000435425 TUBG2Q9NRH3 451 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 DDX28Q9NUL7 540 aaKnown RBP15.92■□□□□ 0.14
SHH-203ENST00000435425 USE1Q9NZ43 259 aa15.92■□□□□ 0.14
SHH-203ENST00000435425 LOC390937A0A1W2PQ73 354 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 ERICH4A6NGS2 130 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 ZSCAN5BA6NJL1 495 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 IGHV1-46P01743 117 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 SLC2A1P11166 492 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 COL8A2P25067 703 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 HSD11B1P28845 292 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 RAD23AP54725 363 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 OR2T2Q6IF00 324 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 ZBTB49Q6ZSB9 765 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 Q71RC1 249 aaPredicted RBP15.91■□□□□ 0.14
SHH-203ENST00000435425 MEPCEQ7L2J0 689 aaKnown RBP15.91■□□□□ 0.14
SHH-203ENST00000435425 EME1Q96AY2 570 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 SLC29A1Q99808 456 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 DECR2Q9NUI1 292 aa15.91■□□□□ 0.14
SHH-203ENST00000435425 FLNAP21333 2647 aaKnown RBP15.9■□□□□ 0.14
SHH-203ENST00000435425 VPS13CQ709C8 3753 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 J3QW42 95 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 CDC14BO60729 498 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 LYNP07948 512 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 H2BFMP0C1H6 154 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 RAC2P15153 192 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 SLC25A16P16260 332 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 SLC15A1P46059 708 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 GRB2P62993 217 aaKnown RBP15.9■□□□□ 0.14
SHH-203ENST00000435425 EFNB1P98172 346 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 MALLQ13021 153 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 PCGF3Q3KNV8 242 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 SNAI3Q3KNW1 292 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 AADACL4Q5VUY2 407 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 DRAM2Q6UX65 266 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 CLEC9AQ6UXN8 241 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms