RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MLF1P58340 268 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 C2orf80Q0P641 193 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 BCL2A1Q16548 175 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 TAL2Q16559 108 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 ZBED5Q49AG3 693 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 GPRC6AQ5T6X5 926 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PAGE2Q7Z2X7 111 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PIANPQ8IYJ0 282 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 BOD1L2Q8IYS8 172 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 MREGQ8N565 214 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 CCDC112Q8NEF3 446 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 VN1R2Q8NFZ6 395 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2L5Q8NG80 312 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 OR5AK3PQ8NH89 298 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 CDC26Q8NHZ8 85 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 RCN3Q96D15 328 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 SLC25A38Q96DW6 304 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PGLYRP4Q96LB8 373 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 HIST1H4GQ99525 98 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 SRXN1Q9BYN0 137 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PORCNQ9H237 461 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 WDR54Q9H977 334 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 TMBIM4Q9HC24 238 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 IMP3Q9NV31 184 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 C1orf109Q9NX04 203 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 ANKRD30BQ9BXX2 1392 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 AK9Q5TCS8 1911 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 IGLV3-22A0A075B6J6 115 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 IGHV1OR21-1A0A087WYE8 117 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 A0A0A6YYD5 115 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF816-ZNF321PA0A0X1KG74 233 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 FAM166BA8MTA8 275 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 SMKR1H3BMG3 65 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 KLRC4-KLRK1H3BQV0 150 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 PLPP3O14495 311 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 B4GALT5O43286 388 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 RAD51CO43502 376 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 TRAPPC6AO75865 159 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 OCM2P0CE71 109 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 RAB5AP20339 215 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 GLP1RP43220 463 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 CEBPGP53567 150 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 SUB1P53999 127 aaKnown RBP eCLIP3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 DIO3P55073 304 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 ST3GAL4Q11206 333 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 STX5Q13190 355 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 FLOT2Q14254 428 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 GGTLC2Q14390 218 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 CLINT1Q14677 625 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 MAD2L1BPQ15013 274 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 IDNKQ5T6J7 187 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 CPTPQ5TA50 214 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 C11orf71Q6IPW1 123 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 APOBEC3HQ6NTF7 200 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 WDR82Q6UXN9 313 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 AHSA2Q719I0 299 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 PPP1R27Q86WC6 154 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 FUNDC1Q8IVP5 155 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 BBS7Q8IWZ6 715 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 CCDC71LQ8N9Z2 235 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2A1Q8NGT9 310 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 OR51A7Q8NH64 312 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 PIK3IP1Q96FE7 263 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 C16orf74Q96GX8 76 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 BEX2Q9BXY8 128 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 POTEKPQ9BYX7 375 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 ING2Q9H160 280 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 TREX1Q9NSU2 369 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 RHBDL2Q9NX52 303 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 MAT2BQ9NZL9 334 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 OR1A1Q9P1Q5 309 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 V9GY05 133 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 MROH7Q68CQ1 1323 aa3.86□□□□□ -1.79
CCDC88A-206ENST00000430086 TRAV8-7A0A075B6U6 113 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 TVP23AA6NH52 213 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 SGCEO43556 437 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 RCBTB2O95199 551 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 DEXIO95424 95 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 CCDC166P0CW27 439 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 CSNK2A2P19784 350 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 VDAC1P21796 283 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 AK4P27144 223 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 NTSP30990 170 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 KIR2DS4P43632 304 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 AP1S2P56377 157 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 TAS2R39P59534 338 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF92Q03936 586 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 SLC39A6Q13433 755 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 CAPRIN1Q14444 709 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 EXOC3L4Q17RC7 722 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 RBM48Q5RL73 367 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 VAX1Q5SQQ9 334 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 THEM4Q5T1C6 240 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 KHDRBS2Q5VWX1 349 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 THOC7Q6I9Y2 204 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 HORMAD1Q86X24 394 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 WDR31Q8NA23 367 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2A12Q8NGT7 310 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 DOK4Q8TEW6 326 aa3.85□□□□□ -1.79
CCDC88A-206ENST00000430086 CPNE4Q96A23 557 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms