RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 OR6K3Q8NGY3 331 aa11.17□□□□□ -0.62
CDH3-202ENST00000429102 C15orf40Q8WUR7 153 aa11.17□□□□□ -0.62
CDH3-202ENST00000429102 FOXRED1Q96CU9 486 aaPredicted RBP11.17□□□□□ -0.62
CDH3-202ENST00000429102 CHMP1AQ9HD42 196 aaPredicted RBP11.17□□□□□ -0.62
CDH3-202ENST00000429102 SLC22A11Q9NSA0 550 aa11.17□□□□□ -0.62
CDH3-202ENST00000429102 SLC5A6Q9Y289 635 aa11.17□□□□□ -0.62
CDH3-202ENST00000429102 TRBV5-7A0A0A0MS05 114 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 LDOC1O95751 146 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 MGMTP16455 207 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 KCNJ3P48549 501 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 SLC25A1P53007 311 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 SLC37A1P57057 533 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 FZD2Q14332 565 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 ADGRE4PQ86SQ3 457 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 TMEM104Q8NE00 496 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 ADAT3Q96EY9 351 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 PHB2Q99623 299 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 GAREM1Q9H706 876 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 PDE7BQ9NP56 450 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 CD207Q9UJ71 328 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 PCDH15Q96QU1 1955 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 A0A1W2PNR3 127 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 CASRP41180 1078 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 KLHL24Q6TFL4 600 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 OVCH2Q7RTZ1 564 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 EXD3Q8N9H8 876 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 PELOQ9BRX2 385 aaKnown RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 TLNRD1Q9H1K6 362 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 ZNF701Q9NV72 531 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 RPH3AQ9Y2J0 694 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 CLDN16Q9Y5I7 305 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 RNF215Q9Y6U7 377 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 MSGN1A6NI15 193 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 TXNL1O43396 289 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 ZNF354AO60765 605 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 CRTAPO75718 401 aaPredicted RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 UBBP0CG47 229 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 UBCP0CG48 685 aaKnown RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 SLC6A9P48067 706 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 BIDP55957 195 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 PPIAP62937 165 aaKnown RBP11.16□□□□□ -0.62
CDH3-202ENST00000429102 TLE3Q04726 772 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 BRICD5Q6PL45 260 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 SPAG16Q8N0X2 631 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 OR5M8Q8NGP6 311 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 OR4K15Q8NH41 348 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 OR51F2Q8NH61 342 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 LRRC61Q9BV99 259 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 GMEB2Q9UKD1 530 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 KCNK7Q9Y2U2 307 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 MYO7BQ6PIF6 2116 aa11.16□□□□□ -0.62
CDH3-202ENST00000429102 RNF222A6NCQ9 220 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 SOCS1O15524 211 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 OR1D5P58170 312 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 EGR3Q06889 387 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 KRBOX4Q5JUW0 171 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 RNF128Q8TEB7 428 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 RASL12Q9NYN1 266 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 SUSD2Q9UGT4 822 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 TRAV36DV7A0A075B6V5 113 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 CCDC163A0A0D9SF12 145 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 ACTL6AO96019 429 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 ITGB2P05107 769 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 ZNF20P17024 532 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 BCKDHBP21953 392 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 HSD11B1P28845 292 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 AGTR1P30556 359 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 RPS27AP62979 156 aaKnown RBP11.15□□□□□ -0.62
CDH3-202ENST00000429102 UBA52P62987 128 aaKnown RBP11.15□□□□□ -0.62
CDH3-202ENST00000429102 OR52N5Q8NH56 324 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 TMPRSS13Q9BYE2 586 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 CUTCQ9NTM9 273 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 PCOLCE2Q9UKZ9 415 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 RHBDD3Q9Y3P4 386 aa11.15□□□□□ -0.62
CDH3-202ENST00000429102 C9orf170A2RU37 121 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 M0R036 132 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 DAOP14920 347 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 RPA2P15927 270 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 RCC1P18754 421 aaPredicted RBP11.15□□□□□ -0.63
CDH3-202ENST00000429102 PGCP20142 388 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 SPINK2P20155 84 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 OR3A2P47893 321 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 FUT7Q11130 342 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 PDCD1Q15116 288 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 SHHQ15465 462 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 CCDC157Q569K6 752 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 PAN3Q58A45 887 aaKnown RBP11.15□□□□□ -0.63
CDH3-202ENST00000429102 GLIPR1L1Q6UWM5 242 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 LDLRAD3Q86YD5 345 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 SCARF2Q96GP6 870 aaPredicted RBP11.15□□□□□ -0.63
CDH3-202ENST00000429102 COPS7AQ9UBW8 275 aa11.15□□□□□ -0.63
CDH3-202ENST00000429102 GDF2Q9UK05 429 aaPredicted RBP11.15□□□□□ -0.63
CDH3-202ENST00000429102 CACNA1EQ15878 2313 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 RHPN2P1A8MT19 583 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 F5H5K5 113 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 G3V3Y1 287 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 ADAM10O14672 748 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 ABCD3P28288 659 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 NPBWR1P48145 328 aa11.14□□□□□ -0.63
CDH3-202ENST00000429102 ASCL1P50553 236 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms