RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 UFD1Q92890 307 aa8.78□□□□□ -1
CD44-207ENST00000425428 APOBEC3DQ96AK3 386 aaPredicted RBP8.78□□□□□ -1
CD44-207ENST00000425428 C4orf45Q96LM5 186 aa8.78□□□□□ -1
CD44-207ENST00000425428 DOK1Q99704 481 aa8.78□□□□□ -1
CD44-207ENST00000425428 BCL2L14Q9BZR8 327 aa8.78□□□□□ -1
CD44-207ENST00000425428 BRD7Q9NPI1 651 aa8.78□□□□□ -1
CD44-207ENST00000425428 CRNNQ9UBG3 495 aaPredicted RBP8.78□□□□□ -1
CD44-207ENST00000425428 ZNF391Q9UJN7 358 aa8.78□□□□□ -1
CD44-207ENST00000425428 R4GMQ9 66 aa8.78□□□□□ -1
CD44-207ENST00000425428 TRBV2A0A0J9YWF9 115 aa8.78□□□□□ -1
CD44-207ENST00000425428 WIPF3A6NGB9 483 aa8.78□□□□□ -1
CD44-207ENST00000425428 XRCC2O43543 280 aa8.78□□□□□ -1
CD44-207ENST00000425428 ATE1O95260 518 aa8.78□□□□□ -1
CD44-207ENST00000425428 LIMS3P0CW19 117 aa8.78□□□□□ -1
CD44-207ENST00000425428 LIMS4P0CW20 117 aa8.78□□□□□ -1
CD44-207ENST00000425428 ZNF14P17017 642 aaPredicted RBP8.78□□□□□ -1
CD44-207ENST00000425428 PSMB9P28065 219 aa8.78□□□□□ -1
CD44-207ENST00000425428 PCSK6P29122 969 aa8.78□□□□□ -1
CD44-207ENST00000425428 OR12D2P58182 307 aa8.78□□□□□ -1
CD44-207ENST00000425428 PSMA6P60900 246 aaKnown RBP8.78□□□□□ -1
CD44-207ENST00000425428 BDH1Q02338 343 aa8.78□□□□□ -1
CD44-207ENST00000425428 RPL22L1Q6P5R6 122 aaKnown RBP8.78□□□□□ -1
CD44-207ENST00000425428 MEX3BQ6ZN04 569 aaKnown RBP8.78□□□□□ -1
CD44-207ENST00000425428 KCTD8Q6ZWB6 473 aa8.78□□□□□ -1
CD44-207ENST00000425428 KLBQ86Z14 1044 aa8.78□□□□□ -1
CD44-207ENST00000425428 SPARTQ8N0X7 666 aa8.78□□□□□ -1
CD44-207ENST00000425428 ZNF676Q8N7Q3 588 aa8.78□□□□□ -1
CD44-207ENST00000425428 FGFBP3Q8TAT2 258 aa8.78□□□□□ -1
CD44-207ENST00000425428 AKAP1Q92667 903 aaKnown RBP eCLIP8.78□□□□□ -1
CD44-207ENST00000425428 THRSPQ92748 146 aa8.78□□□□□ -1
CD44-207ENST00000425428 RHNO1Q9BSD3 238 aa8.78□□□□□ -1
CD44-207ENST00000425428 RGCCQ9H4X1 137 aa8.78□□□□□ -1
CD44-207ENST00000425428 OPA3Q9H6K4 179 aa8.78□□□□□ -1
CD44-207ENST00000425428 PAK1IP1Q9NWT1 392 aaPredicted RBP8.78□□□□□ -1
CD44-207ENST00000425428 ZNF224Q9NZL3 707 aa8.78□□□□□ -1
CD44-207ENST00000425428 MTRF1O75570 445 aaKnown RBP8.77□□□□□ -1.01
CD44-207ENST00000425428 LCKP06239 509 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 CECR9P0C854 216 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 UBCP0CG48 685 aaKnown RBP8.77□□□□□ -1.01
CD44-207ENST00000425428 COX6B1P14854 86 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 CD40P25942 277 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 GCH1P30793 250 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 TGM4P49221 684 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 MMP16P51512 607 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 CDH15P55291 814 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 TFF3Q07654 80 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 TRAM1Q15629 374 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 NEDD8Q15843 81 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 OR2G6Q5TZ20 316 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 SEZ6L2Q6UXD5 910 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 FAM57BQ71RH2 274 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 FTMTQ8N4E7 242 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 CPEB3Q8NE35 698 aaKnown RBP8.77□□□□□ -1.01
CD44-207ENST00000425428 ITFG2Q969R8 447 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 POM121L2Q96KW2 1035 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 ISYNA1Q9NPH2 558 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 ACOT13Q9NPJ3 140 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 ACOXLQ9NUZ1 547 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 TBCCD1Q9NVR7 557 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 CLEC2DQ9UHP7 191 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 MRM2Q9UI43 246 aaKnown RBP8.77□□□□□ -1.01
CD44-207ENST00000425428 GPR160Q9UJ42 338 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 KLHDC2Q9Y2U9 406 aa8.77□□□□□ -1.01
CD44-207ENST00000425428 IGHV1-18A0A0C4DH31 117 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 A0A1B0GVI7 797 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 TMEM212A6NML5 194 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ABCD4O14678 606 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SERPINA3P01011 423 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 IGLV1-44P01699 117 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 CRYGSP22914 178 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 CCKARP32238 428 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ZNF121P58317 390 aaPredicted RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 NAAAQ02083 359 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 EMX1Q04741 257 aaPredicted RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 MLLT11Q13015 90 aaPredicted RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 GPR50Q13585 617 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ALKBH1Q13686 389 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 MOGQ16653 247 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 TMEM244Q5VVB8 128 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SSX6Q7RTT6 188 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 MRPL21Q7Z2W9 205 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 DMRTC2Q8IXT2 367 aaPredicted RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 CCDC54Q8NEL0 328 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 OR5AK2Q8NH90 309 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ABHD4Q8TB40 342 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PLPPR2Q96GM1 343 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 MS4A3Q96HJ5 214 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 AMELYQ99218 206 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 MGLLQ99685 303 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ISG20L2Q9H9L3 353 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 PLEKHA1Q9HB21 404 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PNRC2Q9NPJ4 139 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 KCNN3Q9UGI6 736 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 OR52A1Q9UKL2 312 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ATP23Q9Y6H3 246 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SMG1Q96Q15 3661 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 GPRIN2O60269 458 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 NOL3O60936 208 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 CD2P06729 351 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ACSM4P0C7M7 580 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms