RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ABHD3Q8WU67 409 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 POP5Q969H6 163 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 FAM162AQ96A26 154 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM45BQ96B21 275 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SLC25A36Q96CQ1 311 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SLC41A3Q96GZ6 507 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TPD52L3Q96J77 140 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OXGR1Q96P68 337 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 WFDC6Q9BQY6 131 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OPN3Q9H1Y3 402 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 C1orf21Q9H246 121 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GORASP2Q9H8Y8 452 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 DCAF13Q9NV06 445 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 RIMS3Q9UJD0 308 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CLEC4AQ9UMR7 237 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 NOSIPQ9Y314 301 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 FLVCR1Q9Y5Y0 555 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 NCKAP5O14513 1909 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 MYO18BQ8IUG5 2567 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PHF3Q92576 2039 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PCNX3Q9H6A9 2034 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 DOPEY1Q5JWR5 2465 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 BAHCC1Q9P281 2608 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 KALRNO60229 2985 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 LOC400499M0QZD8 3231 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 MED12Q93074 2177 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 CELSR3Q9NYQ7 3312 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 DOPEY2Q9Y3R5 2298 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 IGKV1D-42A0A075B6H8 117 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 IGHV3-15A0A0B4J1V0 119 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 CPSF4LA6NMK7 179 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 A8MV72 311 aaPredicted RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 MRPL33O75394 65 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 AKR7A3O95154 331 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF682O95780 498 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 SERPINA1P01009 418 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 IGF2P01344 180 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 BGLAPP02818 100 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 IFNW1P05000 195 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 MMP9P14780 707 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 POU2F1P14859 743 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 GTF2E2P29084 291 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 GRPRP30550 384 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 UGT2B10P36537 528 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 RPS5P46782 204 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 SMIM11AP58511 58 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 TAS2R41P59536 307 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 SPOCK1Q08629 439 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ZP4Q12836 540 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 FBXW9Q5XUX1 488 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 TFAP2EQ6VUC0 442 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 STAC2Q6ZMT1 411 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 AAED1Q7RTV5 226 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 CYP4Z1Q86W10 505 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM219Q86XT9 240 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 RBM45Q8IUH3 476 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 RNF113BQ8IZP6 322 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 GABRG1Q8N1C3 465 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ZIC4Q8N9L1 334 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 POMGNT2Q8NAT1 580 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 RBM15BQ8NDT2 890 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 STEAP2Q8NFT2 490 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 OR9K2Q8NGE7 335 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 LIPHQ8WWY8 451 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 GEMIN6Q8WXD5 167 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 HIST1H2ACQ93077 130 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 TAAR8Q969N4 342 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 APH1AQ96BI3 265 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ORAI1Q96D31 301 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 PRRC1Q96M27 445 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 NSMCE2Q96MF7 247 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF300Q96RE9 604 aaPredicted RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 PRSS27Q9BQR3 290 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF426Q9BUY5 554 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 FNDC11Q9BVV2 318 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 KLHL4Q9C0H6 718 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ANKRD19PQ9H560 264 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 MCCC2Q9HCC0 563 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 MRPL39Q9NYK5 338 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 PRPF19Q9UMS4 504 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 SAMD4AQ9UPU9 718 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 FAM32AQ9Y421 112 aaKnown RBP2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ENPP4Q9Y6X5 453 aa2.15□□□□□ -2.06
VPS13A-208ENST00000423463 ICE1Q9Y2F5 2266 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 PCNX1Q96RV3 2341 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 IGHV4OR15-8A0A075B7B6 117 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 SPINT2O43291 252 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 RAMP1O60894 148 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ATP5HO75947 161 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 UBR5O95071 2799 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-208ENST00000423463 OR6A2O95222 327 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 MT-ND1P03886 318 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 THY1P04216 161 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 NCK1P16333 377 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF43P17038 809 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 FUT1P19526 365 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 KLK2P20151 261 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 PAX7P23759 505 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 OR1E2P47887 323 aa2.15□□□□□ -2.07
VPS13A-208ENST00000423463 P2RY4P51582 365 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms