RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 METTL21EPA6NDL7 271 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 TBPP20226 339 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 OR2B8PP59922 312 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 RAB2AP61019 212 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 IL15RAQ13261 267 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 RAB32Q13637 225 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 EBPQ15125 230 aaKnown RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 AGBL4Q5VU57 503 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ADAM5Q6NVV9 412 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 Q6ZRG5 221 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 FAM219AQ8IW50 185 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 FAM24BQ8N5W8 94 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 CCNL2Q96S94 520 aaPredicted RBP9.58□□□□□ -0.88
USP54-204ENST00000422491 SCRT1Q9BWW7 348 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 ADAM19Q9H013 955 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 TOLLIPQ9H0E2 274 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 C5orf66Q9H5L9 145 aa9.58□□□□□ -0.88
USP54-204ENST00000422491 HRKO00198 91 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 TAAR5O14804 337 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PQBP1O60828 265 aaKnown RBP9.57□□□□□ -0.88
USP54-204ENST00000422491 SLC34A2O95436 690 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SFT2D2O95562 160 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 EML2O95834 649 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PMP2P02689 132 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 ADH1AP07327 375 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SLC35E2P0CK97 266 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SELLP14151 372 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 CSF2RAP15509 400 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 UNC119Q13432 240 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PYY3Q5JQD4 70 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 CLEC18BQ6UXF7 455 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 MDGA2Q7Z553 956 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 TAF8Q7Z7C8 310 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 CA13Q8N1Q1 262 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 CSNK1A1LQ8N752 337 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 FRMD1Q8N878 549 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 C8orf44Q96CB5 159 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 OR10C1Q96KK4 312 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SPACA7Q96KW9 195 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 FOXN4Q96NZ1 517 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PRR13Q9NZ81 148 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 RAB22AQ9UL26 194 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 IFITM10A6NMD0 228 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 ST8SIA5O15466 376 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 TNFSF14O43557 240 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 FGF19O95750 216 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 ADH1CP00326 375 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PLGP00747 810 aaPredicted RBP9.57□□□□□ -0.88
USP54-204ENST00000422491 IFNA6P05013 189 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PNMTP11086 282 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 RAB5CP51148 216 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SUPT4H1P63272 117 aaKnown RBP9.57□□□□□ -0.88
USP54-204ENST00000422491 SLC9A3R2Q15599 337 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 KIF26BQ2KJY2 2108 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 GAB4Q2WGN9 574 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 WBP2NLQ6ICG8 309 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SLC18B1Q6NT16 456 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 RTN4RL2Q86UN3 420 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 PPP1R3BQ86XI6 285 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 C1QL4Q86Z23 238 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 DTWD2Q8NBA8 298 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 POC1AQ8NBT0 407 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SGK3Q96BR1 496 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 VWCEQ96DN2 955 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 SLC26A1Q9H2B4 701 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 LMAN1LQ9HAT1 526 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 MRPL22Q9NWU5 206 aaKnown RBP9.57□□□□□ -0.88
USP54-204ENST00000422491 GPR132Q9UNW8 380 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 FLVCR1Q9Y5Y0 555 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 HEBP2Q9Y5Z4 205 aa9.57□□□□□ -0.88
USP54-204ENST00000422491 DNAH14Q0VDD8 3507 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 OTOL1A6NHN0 477 aaPredicted RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 CEACAM18A8MTB9 384 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 OR10H2O60403 315 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 SRSF10O75494 262 aaKnown RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 TIMP1P01033 207 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 HKR1P10072 659 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 MAS1LP35410 378 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 QRFPP83859 136 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 NNATQ16517 81 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 ZNF239Q16600 458 aaKnown RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 ANKRD55Q3KP44 614 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 Q3ZCU0 254 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CHST4Q8NCG5 386 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 TERB2Q8NHR7 220 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 FAM46BQ96A09 425 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 ZNF524Q96C55 264 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 RAB3CQ96E17 227 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 KTI12Q96EK9 354 aaPredicted RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 ELF4Q99607 663 aaPredicted RBP9.56□□□□□ -0.88
USP54-204ENST00000422491 G6PC3Q9BUM1 346 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 C20orf24Q9BUV8 137 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 NRSN2Q9GZP1 204 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 RGCCQ9H4X1 137 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 CNTD2Q9H8S5 307 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 SLC2A4RGQ9NR83 387 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 RHPN2P1A8MT19 583 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 H0YGG7 62 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 GPR37O15354 613 aa9.56□□□□□ -0.88
USP54-204ENST00000422491 ZNF264O43296 627 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms