RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TMEM269A0A1B0GVZ9 245 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 WIPF3A6NGB9 483 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 OR4C45A6NMZ5 311 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 FAM90A27PA6NNH2 459 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 ZG16O60844 167 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 RPP14O95059 124 aaKnown RBP12.38□□□□□ -0.43
SF3B1-204ENST00000414963 CLDN14O95500 239 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 PNPP00491 289 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 ACSM4P0C7M7 580 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 APEX1P27695 318 aaKnown RBP12.38□□□□□ -0.43
SF3B1-204ENST00000414963 LIPAP38571 399 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 PSMB10P40306 273 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 RGS6P49758 472 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 TPTEP56180 551 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 NANOS3P60323 173 aaKnown RBP12.38□□□□□ -0.43
SF3B1-204ENST00000414963 TFF3Q07654 80 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 ALKBH1Q13686 389 aaKnown RBP12.38□□□□□ -0.43
SF3B1-204ENST00000414963 CDK5R1Q15078 307 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 PPA1Q15181 289 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 SSX1Q16384 188 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF544Q6NX49 715 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 COLCA1Q6ZS62 124 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 CATSPERDQ86XM0 798 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 PHC2Q8IXK0 858 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 PRSS35Q8N3Z0 413 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 UFD1Q92890 307 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 TMIGD2Q96BF3 282 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 YIPF6Q96EC8 236 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 C4orf45Q96LM5 186 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 DOK1Q99704 481 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 MOB1AQ9H8S9 216 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 SP140LQ9H930 580 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 G6PC2Q9NQR9 355 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 FRRS1LQ9P0K9 344 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 GRIP1Q9Y3R0 1128 aa12.38□□□□□ -0.43
SF3B1-204ENST00000414963 TRBV2A0A0J9YWF9 115 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 A0A1W2PR80 420 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 NKX2-6A6NCS4 301 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 F5H5K5 113 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 LOC110117498-PIK3R3F6TDL0 507 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 M0R135 149 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 CCRL2O00421 344 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 GPRIN2O60269 458 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 ICMTO60725 284 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 DBHP09172 617 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 CELP19835 753 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 APLNRP35414 380 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 TGFBR2P37173 567 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 CX3CR1P49238 355 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 GDI2P50395 445 aaKnown RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 PRKXP51817 358 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF121P58317 390 aaPredicted RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 GALK2Q01415 458 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 MFGE8Q08431 387 aaPredicted RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 TSTQ16762 297 aaKnown RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 SEZ6L2Q6UXD5 910 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 C22orf34Q6ZV56 151 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 GPR141Q7Z602 305 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 SLC30A7Q8NEW0 376 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 OR1J2Q8NGS2 313 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 SLC7A6Q92536 515 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 SMIM19Q96E16 107 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF799Q96GE5 643 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 C1QTNF5Q9BXJ0 243 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 NDUFB11Q9NX14 153 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 NUFIP1Q9UHK0 495 aaKnown RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 OR52A1Q9UKL2 312 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 SF3B6Q9Y3B4 125 aaKnown RBP12.37□□□□□ -0.43
SF3B1-204ENST00000414963 CACNA1CQ13936 2221 aa12.37□□□□□ -0.43
SF3B1-204ENST00000414963 TMEM212A6NML5 194 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 AGFG2O95081 481 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 ISG15P05161 165 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 THBDP07204 575 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 KIR3DL2P43630 455 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 IDH3GP51553 393 aaPredicted RBP12.36□□□□□ -0.43
SF3B1-204ENST00000414963 WDR38Q5JTN6 314 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 LIPKQ5VXJ0 399 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF704Q6ZNC4 412 aaPredicted RBP12.36□□□□□ -0.43
SF3B1-204ENST00000414963 ELMOD2Q8IZ81 293 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF283Q8N7M2 679 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 ZFP41Q8N8Y5 198 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 OR52H1Q8NGJ2 320 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 GHSRQ92847 366 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 PGLYRP3Q96LB9 341 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 PBOV1Q9GZY1 135 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 BATF3Q9NR55 127 aa12.36□□□□□ -0.43
SF3B1-204ENST00000414963 UBR5O95071 2799 aaPredicted RBP12.35□□□□□ -0.43
SF3B1-204ENST00000414963 IGHV1-18A0A0C4DH31 117 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 C5orf49A4QMS7 147 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 J3QW42 95 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 ZFPL1O95159 310 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 CELA3BP08861 270 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 ZNF35P13682 527 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 CD36P16671 472 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 GALP22466 123 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 PSMA1P25786 263 aaKnown RBP12.35□□□□□ -0.43
SF3B1-204ENST00000414963 PCSK6P29122 969 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 GABRA5P31644 462 aa12.35□□□□□ -0.43
SF3B1-204ENST00000414963 HGFACQ04756 655 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms