RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 BMP1P13497 986 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 KCNE4Q8WWG9 221 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 SDHAP31040 664 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 ACAA2P42765 397 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 PRAMEF20Q5VT98 475 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 TGIF2LXQ8IUE1 241 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 OR4S1Q8NGB4 309 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 EID2BQ96D98 161 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 NPTNQ9Y639 398 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 OR1L4Q8NGR5 311 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 OR1L1Q8NH94 360 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 ZC3HAV1LQ96H79 300 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM191AQ9H0A3 160 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 SLIT2O94813 1529 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 A0A1B0GTW7 788 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 HMGN2P05204 90 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 FABP2P12104 132 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 C1orf61Q13536 156 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 RAB32Q13637 225 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 MYPOPQ86VE0 399 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 NUDT10Q8NFP7 164 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 NUDT11Q96G61 164 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 LCORQ96JN0 433 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF552Q9H707 407 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 IL21Q9HBE4 155 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 H7C1C5 153 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 HOXC5Q00444 222 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 TRMT12Q53H54 448 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 PQLC3Q8N755 202 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 LIMS3P0CW19 117 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 LIMS4P0CW20 117 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 DHODHQ02127 395 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF385BQ569K4 471 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 LBX2Q6XYB7 198 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC38A9Q8NBW4 561 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 GASTP01350 101 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 BCL3P20749 454 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 MAT1AQ00266 395 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 PJVKQ0ZLH3 352 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 C18orf21Q32NC0 220 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 OR51F2Q8NH61 342 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM37Q8WXS4 190 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 ISG20Q96AZ6 181 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 TINAGL1Q9GZM7 467 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 SOX21Q9Y651 276 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 FBLL1A6NHQ2 334 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 CALCBP10092 127 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 PLP1P60201 277 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 FAM3AP98173 230 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 MRPS16Q9Y3D3 137 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC35D3Q5M8T2 416 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 YRDCQ86U90 279 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 IGSF5Q9NSI5 407 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 CD82P27701 267 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 ASAH1Q13510 395 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 OR52I1Q8NGK6 324 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 SLCO3A1Q9UIG8 710 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 RGRP47804 291 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 ACPTQ9BZG2 426 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 NFS1Q9Y697 457 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 TRAV36DV7A0A075B6V5 113 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 TCRBV3S1A0A5B6 114 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 BCL2L11O43521 198 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 HAPLN1P10915 354 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 TBC1D26Q86UD7 250 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 OR10A7Q8NGE5 316 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF583Q96ND8 569 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 NPY6RQ99463 290 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 DNASE2O00115 360 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 HOXC11O43248 304 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 EMC10Q5UCC4 262 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 PSAPL1Q6NUJ1 521 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 DOK3Q7L591 496 aa12.22□□□□□ -0.45
CCDC88A-204ENST00000413716 AP4M1O00189 453 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 PPP1R11O60927 126 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 DCAF12Q5T6F0 453 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 RGPD1P0DJD0 1748 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 A0A1B0GV72 72 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 OR52A4PA6NMU1 304 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF25P17030 456 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 HOXA10P31260 410 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 IRS1P35568 1242 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 GOT1L1Q8NHS2 421 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF516Q92618 1163 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 PIGTQ969N2 578 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 ELOA3CA0A087WX78 387 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 SOD1P00441 154 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 PIGPP57054 158 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 HLA-BQ31612 363 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 OTUD1Q5VV17 481 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 TGIF2LYQ8IUE0 185 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 BHLHE23Q8NDY6 225 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 TFAP2AP05549 437 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 Q56UQ5 140 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 LINC00346Q8IVM7 164 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 FAM71CQ8NEG0 241 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 C11orf40Q8WZ69 217 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 FZD8Q9H461 694 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM9BQ9NQ34 198 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 PITPNC1Q9UKF7 332 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms