RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FUT5Q11128 374 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 CEACAM7Q14002 265 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 CAPRIN1Q14444 709 aaKnown RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 TOMM34Q15785 309 aaPredicted RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 MAPK14Q16539 360 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 RANBP3LQ86VV4 465 aaPredicted RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 FUNDC1Q8IVP5 155 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 OR8H3Q8N146 312 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 ACBD4Q8NC06 268 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 STEAP2Q8NFT2 490 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 RNF128Q8TEB7 428 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 DNAJA4Q8WW22 397 aaPredicted RBP5.49□□□□□ -1.53
USP40-202ENST00000409945 ADGRG7Q96K78 797 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 DPAGT1Q9H3H5 408 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TMEM27Q9HBJ8 222 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 CTPS2Q9NRF8 586 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 ADA2Q9NZK5 511 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TMEM181Q9P2C4 612 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 AMDHD2Q9Y303 409 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TMED7Q9Y3B3 224 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 TEX15Q9BXT5 2789 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 ADGRG4Q8IZF6 3080 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 MED12Q93074 2177 aa5.49□□□□□ -1.53
USP40-202ENST00000409945 LOC100509620A0A075B734 347 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TEX13DA0A0J9YY54 714 aaPredicted RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 MAGEA13PA6NCF6 341 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 B4DXG7 233 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 FBP2O00757 339 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 AQP8O94778 261 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 VAMP5O95183 116 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 AHSA1O95433 338 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 PNMTP11086 282 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 FCGR1AP12314 374 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 GPX2P18283 190 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CCNA2P20248 432 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 AGTR1P30556 359 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 HSPA13P48723 471 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 DLX5P56178 289 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 P2RY6Q15077 328 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 PDK3Q15120 406 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TRIP10Q15642 601 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ZNF674Q2M3X9 581 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CTU2Q2VPK5 515 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 GTDC1Q4AE62 458 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 PAGE3Q5JUK9 113 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OGFRL1Q5TC84 451 aaPredicted RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 OR7E24Q6IFN5 339 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ERICH5Q6P6B1 374 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ZNF836Q6ZNA1 936 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OLIG3Q7RTU3 272 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ABHD12BQ7Z5M8 362 aaPredicted RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 ARPINQ7Z6K5 226 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 VRK2Q86Y07 508 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ICA1LQ8NDH6 482 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ROBO4Q8WZ75 1007 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 EPYCQ99645 322 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CGREF1Q99674 301 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TRIM15Q9C019 465 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OPN3Q9H1Y3 402 aaPredicted RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 Q9H521 79 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 VAPAQ9P0L0 249 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ABCD2Q9UBJ2 740 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CLEC4AQ9UMR7 237 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 SLC9A8Q9Y2E8 581 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 NOSIPQ9Y314 301 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 GMEB1Q9Y692 573 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ABCA12Q86UK0 2595 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 DSPPQ9NZW4 1301 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 MED12LQ86YW9 2145 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 NBPF19A0A087WUL8 3843 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 ZNF724A8MTY0 619 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 A8MVM7 634 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TRIM77I1YAP6 450 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OR2T1O43869 369 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 SSX4O60224 188 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CYTIPO60759 359 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 MRPL33O75394 65 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 GMNNO75496 209 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CTAG2O75638 210 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 KRT33AO76009 404 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 VPREB1P12018 145 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 HSD17B1P14061 328 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CD1EP15812 388 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 MPZP25189 248 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 UGT2B10P36537 528 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 CDKN2AP42771 156 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 ERFP50548 548 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 FUT6P51993 359 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 RGS8P57771 180 aaPredicted RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 TGFBR3Q03167 851 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 BNIP2Q12982 314 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TMEM225Q6GV28 225 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 HMGN2P46Q86SG4 172 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 SPATA24Q86W54 205 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 TUSC5Q8IXB3 177 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 RNF113BQ8IZP6 322 aaKnown RBP5.48□□□□□ -1.53
USP40-202ENST00000409945 UBE2J2Q8N2K1 259 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 OR52E4Q8NGH9 312 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 LINC01560Q8TB33 94 aa5.48□□□□□ -1.53
USP40-202ENST00000409945 THAP6Q8TBB0 222 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms