RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MGLLQ99685 303 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 CRNNQ9UBG3 495 aaPredicted RBP15.69■□□□□ 0.1
SDC1-203ENST00000403076 MYO18BQ8IUG5 2567 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 E9PI62 339 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 LOC110117498-PIK3R3F6TDL0 507 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 INMTO95050 263 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 THBDP07204 575 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 CECR9P0C854 216 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 GTF2A1P52655 376 aaPredicted RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 TAS2R43P59537 309 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 TIGD6Q17RP2 521 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 RSPO1Q2MKA7 263 aaPredicted RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 XAF1Q6GPH4 301 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 ZNF485Q8NCK3 441 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 POM121L2Q96KW2 1035 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 R4GMQ9 66 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 IGHV1-18A0A0C4DH31 117 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 PNMA8CA0A1B0GUJ8 204 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 CASKO14936 926 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 LALBAP00709 142 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 SLC2A1P11166 492 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 ZNF121P58317 390 aaPredicted RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 PSMA6P60900 246 aaKnown RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 ARMCX4Q5H9R4 360 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 DRAM2Q6UX65 266 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 FAM57BQ71RH2 274 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 MYPOPQ86VE0 399 aaPredicted RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 ZFP41Q8N8Y5 198 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 SSC4DQ8WTU2 575 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 COG8Q96MW5 612 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 DCLRE1CQ96SD1 692 aaKnown RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 DOK1Q99704 481 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 KCNS3Q9BQ31 491 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 SP140LQ9H930 580 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 NPDC1Q9NQX5 325 aaPredicted RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 NPAP1Q9NZP6 1156 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 EIF3KQ9UBQ5 218 aaKnown RBP15.68■□□□□ 0.1
SDC1-203ENST00000403076 RTTNQ86VV8 2226 aa15.68■□□□□ 0.1
SDC1-203ENST00000403076 PRR14LQ5THK1 2151 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 WIPF3A6NGB9 483 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 IGLV1-44P01699 117 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 LCATP04180 440 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 ACSM4P0C7M7 580 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 OTX1P32242 354 aaPredicted RBP15.67■□□□□ 0.1
SDC1-203ENST00000403076 PEX19P40855 299 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 TGM4P49221 684 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 NR1H2P55055 460 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 MFGE8Q08431 387 aaPredicted RBP15.67■□□□□ 0.1
SDC1-203ENST00000403076 ALKBH1Q13686 389 aaKnown RBP15.67■□□□□ 0.1
SDC1-203ENST00000403076 C3orf36Q3SXR2 165 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 CCDC58Q4VC31 144 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 RPL22L1Q6P5R6 122 aaKnown RBP15.67■□□□□ 0.1
SDC1-203ENST00000403076 ARL9Q6T311 187 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 NAA40Q86UY6 237 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 IL17RDQ8NFM7 739 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 OR2G2Q8NGZ5 317 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 MUL1Q969V5 352 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 PGAM5Q96HS1 289 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 ISYNA1Q9NPH2 558 aa15.67■□□□□ 0.1
SDC1-203ENST00000403076 TRBV2A0A0J9YWF9 115 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 TBX1O43435 398 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 PNPP00491 289 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 JUNBP17275 347 aaPredicted RBP15.66■□□□□ 0.1
SDC1-203ENST00000403076 CELP19835 753 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 MMP16P51512 607 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 BDH1Q02338 343 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 ACSM1Q08AH1 577 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 MLLT11Q13015 90 aaPredicted RBP15.66■□□□□ 0.1
SDC1-203ENST00000403076 BCL2L15Q5TBC7 163 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 TMEM108Q6UXF1 575 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 FAM206AQ9NX38 181 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 OR52A1Q9UKL2 312 aa15.66■□□□□ 0.1
SDC1-203ENST00000403076 SRSF10O75494 262 aaKnown RBP15.65■□□□□ 0.1
SDC1-203ENST00000403076 CRYAAP02489 173 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 RNF224P0DH78 156 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 NANOS3P60323 173 aaKnown RBP15.65■□□□□ 0.1
SDC1-203ENST00000403076 NAAAQ02083 359 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 HGFACQ04756 655 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 SLC3A1Q07837 685 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 SRSF1Q07955 248 aaKnown RBP eCLIP15.65■□□□□ 0.1
SDC1-203ENST00000403076 DOC2BQ14184 412 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 TSTQ16762 297 aaKnown RBP15.65■□□□□ 0.1
SDC1-203ENST00000403076 ODF4Q2M2E3 257 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 KRTAP27-1Q3LI81 207 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 CATSPERDQ86XM0 798 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 PAQR4Q8N4S7 273 aaPredicted RBP15.65■□□□□ 0.1
SDC1-203ENST00000403076 UFD1Q92890 307 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 PPP1R14AQ96A00 147 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 C4orf45Q96LM5 186 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 DACH2Q96NX9 599 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 OPALINQ96PE5 141 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 PBOV1Q9GZY1 135 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 OR51B6Q9H340 312 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 MOB1AQ9H8S9 216 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 SLC22A13Q9Y226 551 aa15.65■□□□□ 0.1
SDC1-203ENST00000403076 IGHV2OR16-5A0A0B4J2B6 119 aa15.64■□□□□ 0.09
SDC1-203ENST00000403076 ACOD1A6NK06 481 aa15.64■□□□□ 0.09
SDC1-203ENST00000403076 OGG1O15527 345 aa15.64■□□□□ 0.09
SDC1-203ENST00000403076 PTAFRP25105 342 aa15.64■□□□□ 0.09
SDC1-203ENST00000403076 CD40P25942 277 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms