RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 C1orf174Q8IYL3 243 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 STX19Q8N4C7 294 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 PAQR4Q8N4S7 273 aaPredicted RBP12.52□□□□□ -0.41
SEC13-208ENST00000397109 MAPK1IP1LQ8NDC0 245 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 CPEB3Q8NE35 698 aaKnown RBP12.52□□□□□ -0.41
SEC13-208ENST00000397109 OR2T33Q8NG76 320 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 C11orf40Q8WZ69 217 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 RASD2Q96D21 266 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 OR2H1Q9GZK4 316 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 TBC1D23Q9NUY8 699 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 MRPS18AQ9NVS2 196 aaKnown RBP12.52□□□□□ -0.41
SEC13-208ENST00000397109 IL20RAQ9UHF4 553 aa12.52□□□□□ -0.41
SEC13-208ENST00000397109 LY6HO94772 140 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 LCKP06239 509 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 IGFBP1P08833 259 aaPredicted RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 ADRA2AP08913 450 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 FAM157BP0CG42 384 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 CRABP1P29762 137 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 ENDOGQ14249 297 aaKnown RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 MOGQ16653 247 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 MSMPQ1L6U9 139 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 KLHL22Q53GT1 634 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 GPR107Q5VW38 600 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 TMEM236Q5W0B7 351 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 DNM1P34Q6PK57 102 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 AHSA2Q719I0 299 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 AKR7LQ8NHP1 331 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 SYNPRQ8TBG9 265 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 C12orf43Q96C57 262 aaKnown RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 POM121L2Q96KW2 1035 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 ERMAPQ96PL5 475 aaPredicted RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 SYT3Q9BQG1 590 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 PIMREGQ9BSJ6 248 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 ZNF416Q9BWM5 594 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 TSSK6Q9BXA6 273 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 WNT5BQ9H1J7 359 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 SYT4Q9H2B2 425 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 DUSP13Q9UII6 198 aa12.51□□□□□ -0.41
SEC13-208ENST00000397109 CHD3Q12873 2000 aaKnown RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 FN1P02751 2386 aaKnown RBP12.51□□□□□ -0.41
SEC13-208ENST00000397109 A0A096LNT2 108 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 C5orf49A4QMS7 147 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 SLC16A7O60669 478 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 PPP1R3DO95685 299 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 MT-ND2P03891 347 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 COX5BP10606 129 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 ZNF250P15622 560 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 CTLA4P16410 223 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 HOXB4P17483 251 aaPredicted RBP12.5□□□□□ -0.41
SEC13-208ENST00000397109 CCNOP22674 350 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 KLF3P57682 345 aaPredicted RBP12.5□□□□□ -0.41
SEC13-208ENST00000397109 SCRN3Q0VDG4 424 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 ST3GAL4Q11206 333 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 IRF3Q14653 427 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 CLEC12AQ5QGZ9 265 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 JAZF1Q86VZ6 243 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 GLB1L2Q8IW92 636 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 TCEANCQ8N8B7 351 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 OR4Q3Q8NH05 313 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 TMEM163Q8TC26 289 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 RFKQ969G6 155 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 POM121Q96HA1 1249 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 SNX18Q96RF0 628 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 IFT27Q9BW83 186 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 FN3KQ9H479 309 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 SLCO1C1Q9NYB5 712 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 TVP23BQ9NYZ1 205 aa12.5□□□□□ -0.41
SEC13-208ENST00000397109 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.5□□□□□ -0.41
SEC13-208ENST00000397109 A0A1W2PPW3 197 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 PRODHO43272 600 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 TLX2O43763 284 aaPredicted RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 RENP00797 406 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 DAOP14920 347 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 USF1P22415 310 aaPredicted RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 NOS3P29474 1203 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 GRK5P34947 590 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 CDKN2AP42771 156 aaKnown RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 LSM6P62312 80 aaKnown RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 KRTAP1-1Q07627 177 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 TMED1Q13445 227 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 SNAPC1Q16533 368 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 CARTPTQ16568 116 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 ZNF362Q5T0B9 420 aaPredicted RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 ARL9Q6T311 187 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 LRP11Q86VZ4 500 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 ZCCHC24Q8N2G6 241 aaKnown RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 OR1J1Q8NGS3 322 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 UBASH3BQ8TF42 649 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 SGCDQ92629 289 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 NUAK2Q9H093 628 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 OR51B6Q9H340 312 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 RERGLQ9H628 205 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 ELOVL3Q9HB03 270 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 AASSQ9UDR5 926 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 FZR1Q9UM11 496 aa12.49□□□□□ -0.41
SEC13-208ENST00000397109 COA3Q9Y2R0 106 aaPredicted RBP12.49□□□□□ -0.41
SEC13-208ENST00000397109 SONP18583 2426 aaKnown RBP12.48□□□□□ -0.41
SEC13-208ENST00000397109 IGLV3-9A0A075B6K5 115 aa12.48□□□□□ -0.41
SEC13-208ENST00000397109 LOC100509620A0A075B734 347 aa12.48□□□□□ -0.41
SEC13-208ENST00000397109 VWC2LB2RUY7 222 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms