RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 THAP6Q8TBB0 222 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 IFI44Q8TCB0 444 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 STT3BQ8TCJ2 826 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PAQR8Q8TEZ7 354 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ASB17Q8WXJ9 295 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 TMEM234Q8WY98 164 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 FAM46AQ96IP4 442 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ADAD1Q96M93 576 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 TEAD3Q99594 435 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 VRK1Q99986 396 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ALG12Q9BV10 488 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ALG8Q9BVK2 526 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 NXF5Q9H1B4 397 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 TRIM36Q9NQ86 728 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 HINT3Q9NQE9 182 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 C20orf141Q9NUB4 165 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 KLHL9Q9P2J3 617 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 DHCR7Q9UBM7 475 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 METTL1Q9UBP6 276 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 COPS7AQ9UBW8 275 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 FBLN5Q9UBX5 448 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ALPK2Q86TB3 2170 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 A0A0D9SG52 128 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 A0A0G2JN53 185 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 TMEM272A0A1B0GTI8 110 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 A6NIZ1 184 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SCDO00767 359 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 FGF16O43320 207 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 UMODP07911 640 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CD59P13987 128 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 MUC1P15941 1255 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ABOP16442 354 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 TMEM11P17152 192 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 FSTP19883 344 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ACHEP22303 614 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 GPX4P36969 197 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 GPR4P46093 362 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 NPBWR1P48145 328 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 RAP1BP61224 184 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 RAP1AP62834 184 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 DEFA6Q01524 100 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZNF85Q03923 595 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PMS2P11Q13670 270 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CD226Q15762 336 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ACER2Q5QJU3 275 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 FAM199XQ6PEV8 388 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZNF813Q6ZN06 617 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZNF627Q7L945 461 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CXXC5Q7LFL8 322 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 DPPA2Q7Z7J5 298 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PPP1R3BQ86XI6 285 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CMTM4Q8IZR5 234 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 KCNRGQ8N5I3 272 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 AGBL5Q8NDL9 886 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 DNAAF1Q8NEP3 725 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 OR52B4Q8NGK2 314 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 GTF3AQ92664 365 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 NUDT22Q9BRQ3 303 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SUCNR1Q9BXA5 334 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SEC11CQ9BY50 192 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 WDR13Q9H1Z4 485 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 TCF7L1Q9HCS4 588 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PLSCR4Q9NRQ2 329 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZNF629Q9UEG4 869 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 DMRT1Q9Y5R6 373 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 TRBV5-7A0A0A0MS05 114 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CPSF4LA6NMK7 179 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ATXN7O15265 892 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ICOSLGO75144 302 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 REM1O75628 298 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 KRT33AO76009 404 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZFAND5O76080 213 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CSTAP01040 98 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 IGLV3-1P01715 115 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 UCHL1P09936 223 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PTH2RP49190 550 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 RAB5BP61020 215 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CXADRP78310 365 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SLC3A1Q07837 685 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 PDZK1IP1Q13113 114 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SMCO1Q147U7 214 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 SSX2Q16385 188 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 EIF2S3LQ2VIR3 472 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 RPUSD3Q6P087 351 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 ZNF529Q6P280 563 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 OR2W3Q7Z3T1 314 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 LYPD6Q86Y78 171 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ACBD7Q8N6N7 88 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 OR1S2Q8NGQ3 325 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 AKR7LQ8NHP1 331 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 MRPL13Q9BYD1 178 aaKnown RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 TLNRD1Q9H1K6 362 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 ACKR4Q9NPB9 350 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 KLK11Q9UBX7 282 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 HDGFL3Q9Y3E1 203 aa4.79□□□□□ -1.64
VPS41-203ENST00000395969 CHCHD2Q9Y6H1 151 aaPredicted RBP4.79□□□□□ -1.64
VPS41-203ENST00000395969 TRBV23OR9-2A0A075B6M9 112 aa4.78□□□□□ -1.64
VPS41-203ENST00000395969 NUDT19A8MXV4 375 aa4.78□□□□□ -1.64
VPS41-203ENST00000395969 PROB1E7EW31 1015 aa4.78□□□□□ -1.64
VPS41-203ENST00000395969 PYCARD-AS1I3L0S3 204 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms