RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 HSD17B14Q9BPX1 270 aa8.02□□□□□ -1.12
LIG3-202ENST00000378526 DEFB129Q9H1M3 183 aa8.02□□□□□ -1.12
LIG3-202ENST00000378526 ZNF430Q9H8G1 570 aaPredicted RBP8.02□□□□□ -1.12
LIG3-202ENST00000378526 ZNF355PQ9NSJ1 428 aa8.02□□□□□ -1.12
LIG3-202ENST00000378526 ZGRF1Q86YA3 2104 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 H3BMH7 237 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 RNF225M0QZC1 329 aaPredicted RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 P04436 131 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 CLEC2LP0C7M8 214 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 HIST1H1EP10412 219 aaKnown RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 SMPD1P17405 629 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 NDUFB7P17568 137 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ZNF157P51786 506 aaPredicted RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 RAB38P57729 211 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TMEM201Q5SNT2 666 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ZNF776Q68DI1 518 aaPredicted RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 CLEC18BQ6UXF7 455 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DEFB128Q7Z7B8 93 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 OR1L1Q8NH94 360 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ISL2Q96A47 359 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DLC1Q96QB1 1528 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 MFNGO00587 321 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 LEFTY1O75610 366 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 RAD52P43351 418 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 EOGTQ5NDL2 527 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ZNF595Q8IYB9 648 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DIO2Q92813 273 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 PTP4A1Q93096 173 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 VN1R3Q9BXE9 311 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TMEM150BA6NC51 233 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 C19orf67A6NJJ6 358 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ZNF217O75362 1048 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ANKRD34CP0C6C1 535 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 T-ENOLP0DO92 83 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 SHC1P29353 583 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 AWAT1Q58HT5 328 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 CDHR3Q6ZTQ4 885 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TUSC5Q8IXB3 177 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TREX1Q9NSU2 369 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 MRPS2Q9Y399 296 aaKnown RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 IQGAP1P46940 1657 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 LAMA4Q16363 1823 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 SMIM35A0A1B0GVV1 85 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 SELENBP1Q13228 472 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TPBGQ13641 420 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 LEXMQ3ZCV2 418 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 RPS26P11Q5JNZ5 115 aaPredicted RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 GLDNQ6ZMI3 551 aaPredicted RBP8.02□□□□□ -1.13
LIG3-202ENST00000378526 TAAR6Q96RI8 345 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 AKIP1Q9NQ31 210 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 SLC45A2Q9UMX9 530 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 MST1RQ04912 1400 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 KIF13BQ9NQT8 1826 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DOCK6Q96HP0 2047 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 TRBV23OR9-2A0A075B6M9 112 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 FAM221AA4D161 298 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 CLEC18AA5D8T8 446 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 CRYBA1P05813 215 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 RHBDD2Q6NTF9 364 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 CLEC18CQ8NCF0 446 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 ARRDC3Q96B67 414 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DEFB126Q9BYW3 111 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 AKAP12Q02952 1782 aa8.02□□□□□ -1.13
LIG3-202ENST00000378526 DHRS7CA6NNS2 312 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 TNFSF11O14788 317 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 APCSP02743 223 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 CCR2P41597 374 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 LSM11P83369 360 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PLPPR5Q32ZL2 321 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 SYT9Q86SS6 491 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ZDHHC22Q8N966 263 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR52I2Q8NH67 350 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 RNF133Q8WVZ7 376 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 NEURL2Q9BR09 285 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 DERL1Q9BUN8 251 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ANXA10Q9UJ72 324 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 NPHP4O75161 1426 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PQLC2LA1A4F0 135 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ANKRD61A6NGH8 418 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 SH2D7A6NKC9 451 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 GPR32O75388 356 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 CIRBPQ14011 172 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 WDR34Q96EX3 536 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 HIST1H4GQ99525 98 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 TMEM204Q9BSN7 226 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ZNF443Q9Y2A4 671 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 MTCL1Q9Y4B5 1905 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 A0A0G2JLW4 131 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR5B21A6NL26 309 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ZNF749O43361 778 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 GALR2O43603 387 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 IL4P05112 153 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 CD96P40200 585 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 SLC35B1P78383 322 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 TRMT12Q53H54 448 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PRAMEF5Q5TYX0 476 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 PRAMEF6Q5VXH4 476 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 MRM1Q6IN84 353 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PLXDC2Q6UX71 529 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 GATSQ8NAP1 163 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms