RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 IFI30P13284 250 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 FPR3P25089 353 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 PMELP40967 661 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 CRYBA2P53672 197 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 LSM6P62312 80 aaKnown RBP11.47□□□□□ -0.57
VPS29-201ENST00000360579 ST3GAL3Q11203 375 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 C11orf91Q3C1V1 193 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 KPRPQ5T749 579 aaPredicted RBP11.47□□□□□ -0.57
VPS29-201ENST00000360579 DHRS7BQ6IAN0 325 aaPredicted RBP11.47□□□□□ -0.57
VPS29-201ENST00000360579 Q6ZSV7 163 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 IGFN1Q86VF2 1251 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 LRRC75AQ8NAA5 344 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 BHLHE23Q8NDY6 225 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 OR10A6Q8NH74 314 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 SLC7A6Q92536 515 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 EBF4Q9BQW3 602 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 HCAR1Q9BXC0 346 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 MMADHCQ9H3L0 296 aaPredicted RBP11.47□□□□□ -0.57
VPS29-201ENST00000360579 TRIM36Q9NQ86 728 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 GRHPRQ9UBQ7 328 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 CAB39Q9Y376 341 aaPredicted RBP11.47□□□□□ -0.57
VPS29-201ENST00000360579 FAM96BQ9Y3D0 163 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 DOCK11Q5JSL3 2073 aa11.47□□□□□ -0.57
VPS29-201ENST00000360579 TEX13CA0A0J9YWL9 993 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 A0A0U1RQK1 487 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 G3V4G9 280 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 H7C1C5 153 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 NDUFA2O43678 99 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 TSPAN9O75954 239 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 SLC9A3P48764 834 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 LCN6P62502 163 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 NFYCQ13952 458 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 Q6ZPA2 131 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 OAFQ86UD1 273 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 GALNT4Q8N4A0 578 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 OR51A7Q8NH64 312 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 LHX4Q969G2 390 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 ZBTB9Q96C00 473 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 ZNF583Q96ND8 569 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 NDEL1Q9GZM8 345 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 TMCC3Q9ULS5 477 aa11.46□□□□□ -0.57
VPS29-201ENST00000360579 NOP16Q9Y3C1 178 aaKnown RBP11.46□□□□□ -0.57
VPS29-201ENST00000360579 TRAV27A0A087WT01 109 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 ELOVL7A1L3X0 281 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 PRSS37A4D1T9 235 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 ECDO95905 644 aaPredicted RBP11.45□□□□□ -0.58
VPS29-201ENST00000360579 OPN1MWP04001 364 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 OPN1MW2P0DN77 364 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 OPN1MW3P0DN78 364 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 TNFRSF1BP20333 461 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 TGFBR2P37173 567 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 CD200P41217 278 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 MAGOHP61326 146 aaKnown RBP11.45□□□□□ -0.58
VPS29-201ENST00000360579 GLB1L2Q8IW92 636 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 FAM156AQ8NDB6 213 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 NPRL2Q8WTW4 380 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 TSPEARQ8WU66 669 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 HDHD2Q9H0R4 259 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 SIRPDQ9H106 197 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 RNF7Q9UBF6 113 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 VPREB3Q9UKI3 123 aa11.45□□□□□ -0.58
VPS29-201ENST00000360579 ZNF816-ZNF321PA0A0X1KG74 233 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 EFCAB9A8MZ26 197 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 LGALS8O00214 317 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 ADAM20O43506 726 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 SHOX2O60902 331 aaPredicted RBP11.44□□□□□ -0.58
VPS29-201ENST00000360579 FAM20BO75063 409 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 HLA-DPB1P04440 258 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 CD14P08571 375 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 DBHP09172 617 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 FBP1P09467 338 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 CTLA4P16410 223 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 FUT4P22083 530 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 RPL4P36578 427 aaKnown RBP11.44□□□□□ -0.58
VPS29-201ENST00000360579 OR1E2P47887 323 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 GZMMP51124 257 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 RAD23AP54725 363 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 MAB21L1Q13394 359 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 CCDC92Q53HC0 331 aaPredicted RBP11.44□□□□□ -0.58
VPS29-201ENST00000360579 CLEC12AQ5QGZ9 265 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 SAMD5Q5TGI4 173 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 Q6ZTK2 550 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 MICU2Q8IYU8 434 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 C19orf18Q8NEA5 215 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 GJC3Q8NFK1 279 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 PPP1R14AQ96A00 147 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 PRRC1Q96M27 445 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 COQ7Q99807 217 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 SH3GL1Q99961 368 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 ECSITQ9BQ95 431 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 PARD6BQ9BYG5 372 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 SLC22A4Q9H015 551 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 FN3KRPQ9HA64 309 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 CTSZQ9UBR2 303 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 POLR1DQ9Y2S0 133 aa11.44□□□□□ -0.58
VPS29-201ENST00000360579 TRAV38-1A0A0B4J264 116 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 RER1O15258 196 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 KHDRBS3O75525 346 aaKnown RBP11.43□□□□□ -0.58
VPS29-201ENST00000360579 ARF6P62330 175 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 GUCA2AQ02747 115 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms