RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SPOCK1Q08629 439 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 CTF1Q16619 201 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 ARMCX4Q5H9R4 360 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 FAM27D1Q5T7N8 215 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 DCDC5Q6ZRR9 648 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 BEND4Q6ZU67 534 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 SYT9Q86SS6 491 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 GABRG1Q8N1C3 465 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 PAQR4Q8N4S7 273 aaPredicted RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 ZNF676Q8N7Q3 588 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 CPEB3Q8NE35 698 aaKnown RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 RPL3LQ92901 407 aaKnown RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 DVL3Q92997 716 aaPredicted RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 SFXN3Q9BWM7 321 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 RNF167Q9H6Y7 350 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 RYDENQ9NUL5 291 aaKnown RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 DUSP13Q9UII6 198 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 ZNF835Q9Y2P0 537 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 SETXQ7Z333 2677 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 TRBV2A0A0J9YWF9 115 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 LOC102725191A0A1B0GVB3 256 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 C16orf97H3BN30 126 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 GABARAPO95166 117 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ABHD16AO95870 558 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 PNPP00491 289 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 NGFP01138 241 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 GAAP10253 952 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ALOX5APP20292 161 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 BMXP51813 675 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 SLC36A2Q495M3 483 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OR5AS1Q8N127 324 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ZNF433Q8N7K0 673 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 OR1K1Q8NGR3 316 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OR10AC1Q8NH08 325 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 NABP1Q96AH0 204 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 COX4I2Q96KJ9 171 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 MGLLQ99685 303 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ATF6BQ99941 703 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ACOT13Q9NPJ3 140 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 MRM2Q9UI43 246 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 SIRT4Q9Y6E7 314 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 ANKRD17O75179 2603 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 PLATP00750 562 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 CHRNB4P30926 498 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 CEACAM8P31997 349 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 FABP6P51161 128 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 GP2P55259 537 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 HLXQ14774 488 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 TMPRSS11AQ6ZMR5 421 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ABHD12BQ7Z5M8 362 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 OR51A4Q8NGJ6 313 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OR10S1Q8NGN2 331 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 YIPF6Q96EC8 236 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 GLRX2Q9NS18 164 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 CYB5R1Q9UHQ9 305 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 LOC110117498-PIK3R3F6TDL0 507 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 P2RY10O00398 339 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OR2T7P0C7T2 308 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OCM2P0CE71 109 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OCMP0CE72 109 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 SLC15A1P46059 708 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 CX3CR1P49238 355 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 RIDAP52758 137 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 ZNF121P58317 390 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 MRPS34P82930 218 aaKnown RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 AQP6Q13520 282 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 SYT6Q5T7P8 510 aaPredicted RBP8.03□□□□□ -1.12
USP4-202ENST00000351842 TMEM211Q6ICI0 200 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 SLC22A25Q6T423 547 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 PRSS48Q7RTY5 328 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ZNF101Q8IZC7 436 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 GJC3Q8NFK1 279 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 OR2T27Q8NH04 317 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ABHD4Q8TB40 342 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 ITPKCQ96DU7 683 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 PELI1Q96FA3 418 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 PGAM5Q96HS1 289 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 AKIP1Q9NQ31 210 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 PLSCR4Q9NRQ2 329 aa8.03□□□□□ -1.12
USP4-202ENST00000351842 TUBAL3A6NHL2 446 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 ACOD1A6NK06 481 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 MSTNO14793 375 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 CCKARP32238 428 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 GABRA6Q16445 453 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 HIST3H3Q16695 136 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 KCTD18Q6PI47 426 aaPredicted RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 METAP1DQ6UB28 335 aaPredicted RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 TSEN15Q8WW01 171 aaKnown RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 TMEM45BQ96B21 275 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 WFIKKN1Q96NZ8 548 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 DMRTA2Q96SC8 542 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 GAL3ST1Q99999 423 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 OR2H1Q9GZK4 316 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 ACANP16112 2415 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 IQCMA0A1B0GVH7 501 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 M0R135 149 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 CGAP01215 116 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 MT-ND5P03915 603 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 STOMP27105 288 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 APLNRP35414 380 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms