RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RNF170Q96K19 258 aa6.15□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF426Q9BUY5 554 aa6.15□□□□□ -1.42
SF3B1-201ENST00000335508 ZCCHC4Q9H5U6 513 aa6.15□□□□□ -1.42
SF3B1-201ENST00000335508 VSX1Q9NZR4 365 aaPredicted RBP6.15□□□□□ -1.42
SF3B1-201ENST00000335508 TRGV8A0A0C4DH27 118 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF816-ZNF321PA0A0X1KG74 233 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 hCG_1809904A0A1W2PP81 198 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 A0A1W2PPE2 198 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 A0A1W2PR64 198 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 A0A1W2PRV1 198 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 OR14I1A6ND48 311 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 AHRRA9YTQ3 701 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 PLPP2O43688 288 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 RAB1AP62820 205 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ARF1P84077 181 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 SSBP1Q04837 148 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF585AQ6P3V2 769 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 GFRALQ6UXV0 394 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF687Q8N1G0 1237 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 TAAR8Q969N4 342 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 CMSS1Q9BQ75 279 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 LIN7BQ9HAP6 207 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 MALRD1Q5VYJ5 2156 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 OR6C68A6NDL8 312 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ZFPL1O95159 310 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 SRMP19623 302 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 RAD52P43351 418 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 DUSP2Q05923 314 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 CDK10Q15131 360 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 CDONQ4KMG0 1287 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 FAM27BQ5VT28 67 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 TSEN54Q7Z6J9 526 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 Q8IYB0 196 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ADIPOR1Q96A54 375 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 C10orf35Q96D05 121 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 THAP7Q9BT49 309 aaPredicted RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 RTL8AQ9BWD3 113 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 TAS2R16Q9NYV7 291 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 GTF3C1Q12789 2109 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 L7N2F9 121 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 PLPP3O14495 311 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 RPS4Y1P22090 263 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 RPS18P62269 152 aaKnown RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 VAMP2P63027 116 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 CATR1Q13166 79 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 C16orf47Q6ZP98 133 aaPredicted RBP6.15□□□□□ -1.43
SF3B1-201ENST00000335508 OR1M1Q8NGA1 313 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 OR1F12Q8NHA8 337 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF416Q9BWM5 594 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 GPR84Q9NQS5 396 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 POLE4Q9NR33 117 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 SLC17A5Q9NRA2 495 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 ACOXLQ9NUZ1 547 aa6.15□□□□□ -1.43
SF3B1-201ENST00000335508 FAM230AA0A1W2PPH8 454 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 OR5B21A6NL26 309 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 H7C417 338 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 WDR1O75083 606 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 GPX5O75715 221 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 RGS11O94810 467 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 IGFBP1P08833 259 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 GSTP1P09211 210 aaKnown RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 AKAIN1P0CW23 69 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 SMIM18P0DKX4 95 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 DNASE1P24855 282 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 RPS25P62851 125 aaKnown RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 SPIN3Q5JUX0 258 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 C9orf135Q5VTT2 229 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 B3GNTL1Q67FW5 361 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 MRPL41Q8IXM3 137 aaKnown RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 ASCC1Q8N9N2 400 aaKnown RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 PRO3102Q9H379 93 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 EMC7Q9NPA0 242 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 HRKO00198 91 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 PTP4A3O75365 173 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 IGHA1P01876 353 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 B4GALT1P15291 398 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 AKR1C2P52895 323 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 FGL1Q08830 312 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 DYRK1AQ13627 763 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 CLVS2Q5SYC1 327 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 ARSKQ6UWY0 536 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 C19orf35Q6ZS72 473 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 NPRL2Q8WTW4 380 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 RNF133Q8WVZ7 376 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 SLC25A46Q96AG3 418 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 CHST6Q9GZX3 395 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 SLC25A18Q9H1K4 315 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 TP63Q9H3D4 680 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 NELFAQ9H3P2 528 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 UBE2J1Q9Y385 318 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 P2RY10O00398 339 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 EPPINO95925 133 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 DBHP09172 617 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 H2AFB2P0C5Z0 115 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 SLC2A1P11166 492 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 CPEP16870 476 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 HTR2AP28223 471 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 BLVRBP30043 206 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-201ENST00000335508 GSG1Q2KHT4 349 aa6.14□□□□□ -1.43
SF3B1-201ENST00000335508 PLCXD3Q63HM9 321 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms