RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DRAM2Q6UX65 266 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 ADAMTSL4Q6UY14 1074 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 Q6ZRG5 221 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 RNF128Q8TEB7 428 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 ASB5Q8WWX0 329 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC25A44Q96H78 314 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 SPACA7Q96KW9 195 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 PRRT1Q99946 306 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM106CQ9BVX2 250 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TIMM10BQ9Y5J6 103 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 OTOL1A6NHN0 477 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 B3GALT2O43825 422 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 WASP42768 502 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TSFMP43897 325 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 PCP4P48539 62 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 NPY4RP50391 375 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 OR10H5Q8NGA6 315 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TMEM41AQ96HV5 264 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 NUDT9Q9BW91 350 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TOLLIPQ9H0E2 274 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 TAF9BQ9HBM6 251 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 SPACA1Q9HBV2 294 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 DHDHQ9UQ10 334 aa12.06□□□□□ -0.48
CCDC88C-201ENST00000331194 CNTRLQ7Z7A1 2325 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 MFNGO00587 321 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 DUS4LO95620 317 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 HPGDP15428 266 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 ACTR1BP42025 376 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 FHITP49789 147 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 SCAND1P57086 179 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB2AP61019 212 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 SSBP1Q04837 148 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 GPR18Q14330 331 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 PDZD11Q5EBL8 140 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 PTCRAQ6ISU1 281 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 BTNL8Q6UX41 500 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 GKN2Q86XP6 184 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF615Q8N8J6 731 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 KREMEN2Q8NCW0 462 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 PMM1Q92871 262 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 C14orf144Q96I85 54 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 LRFN5Q96NI6 719 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 OCSTAMPQ9BR26 566 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 TCEAL7Q9BRU2 100 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 UCK1Q9HA47 277 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 GRHPRQ9UBQ7 328 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 DMRT1Q9Y5R6 373 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 LOC101059948A0A1B0GTJ6 334 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 A0A1B0GWJ7 208 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 RHPN2P1A8MT19 583 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 C11orf98E9PRG8 122 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 HSD17B7P56937 341 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 RPS4XP62701 263 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 ARL6IP6Q8N6S5 226 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 SLAMF9Q96A28 289 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 LURAP1Q96LR2 239 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 TSPAN32Q96QS1 320 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 STACQ99469 402 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 LPAR4Q99677 370 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 PIGQQ9BRB3 760 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC17A9Q9BYT1 436 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 TMPRSS5Q9H3S3 457 aa12.05□□□□□ -0.48
CCDC88C-201ENST00000331194 NUDT19A8MXV4 375 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 NME2P1O60361 137 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 CSTAP01040 98 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC35G6P0C7Q6 338 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 GRK6P43250 576 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ARRB1P49407 418 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 STARD6P59095 220 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RASGEF1BQ0VAM2 473 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 HNRNPA1L2Q32P51 320 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 FBXO46Q6PJ61 603 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RNF144BQ7Z419 303 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RCBTB1Q8NDN9 531 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 INTS14Q96SY0 518 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC5A7Q9GZV3 580 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 COLEC10Q9Y6Z7 277 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 TRIOBPQ9H2D6 2365 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 TRBV6-7A0A0A0MS04 114 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 C17orf51A8MQB3 221 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 H7C1Q1 480 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC31A2O15432 143 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SPARCP09486 303 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 PVRP15151 417 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 GLP1RP43220 463 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RPL18Q07020 188 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 LCN9Q8WX39 176 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 JSRP1Q96MG2 331 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RGCCQ9H4X1 137 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 PDE7BQ9NP56 450 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 SLC2A8Q9NY64 477 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 WIF1Q9Y5W5 379 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 RAB27BO00194 218 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 EIF1AYO14602 144 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 ZNF432O94892 652 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 FGF19O95750 216 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 IFNA6P05013 189 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 HOXB5P09067 269 aa12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 EIF1AXP47813 144 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-201ENST00000331194 DVL1P1P54792 670 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms