RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 SCNM1Q9BWG6 230 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 BEX2Q9BXY8 128 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 ZCCHC4Q9H5U6 513 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 ABCB9Q9NP78 766 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 G6PC2Q9NQR9 355 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 ASH2LQ9UBL3 628 aa13.72□□□□□ -0.21
LSM6-201ENST00000296581 NUFIP1Q9UHK0 495 aaKnown RBP13.72□□□□□ -0.21
LSM6-201ENST00000296581 MCTS1Q9ULC4 181 aaKnown RBP13.72□□□□□ -0.21
LSM6-201ENST00000296581 LINC00862A6NCI5 91 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 CPN1P15169 458 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 RAB3BP20337 219 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 MMP16P51512 607 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 ZNF84P51523 738 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 MRPS34P82930 218 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 PMP22Q01453 160 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 TNK1Q13470 666 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SPANXN2Q5MJ10 180 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 DDI2Q5TDH0 399 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 IGFL3Q6UXB1 125 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 CDH24Q86UP0 819 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SNIP1Q8TAD8 396 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 ACOT12Q8WYK0 555 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 KCTD12Q96CX2 325 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 ZNF416Q9BWM5 594 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 LDAHQ9H6V9 325 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 CENPMQ9NSP4 180 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SPRR3Q9UBC9 169 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SLC22A13Q9Y226 551 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 AUP1Q9Y679 476 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 NCOA6Q14686 2063 aaPredicted RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 TRBV5-7A0A0A0MS05 114 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 I3L521 148 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 IGHG3P01860 377 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 ZNF250P15622 560 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SRMP19623 302 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 GUCA1AP43080 201 aaPredicted RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 MAGEB1P43366 347 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 OR10A3P58181 314 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 CD83Q01151 205 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 ENDOGQ14249 297 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 SGCAQ16586 387 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 RIPPLY2Q5TAB7 128 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SFXN4Q6P4A7 337 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 OR10AC1Q8NH08 325 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 THRSPQ92748 146 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 WDYHV1Q96HA8 205 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 SDHCQ99643 169 aaPredicted RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 RBM24Q9BX46 236 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 RNF122Q9H9V4 155 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 PNRC2Q9NPJ4 139 aaKnown RBP13.71□□□□□ -0.21
LSM6-201ENST00000296581 C14orf119Q9NWQ9 140 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 EMC9Q9Y3B6 208 aa13.71□□□□□ -0.21
LSM6-201ENST00000296581 ZNF878C9JN71 531 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 LOC110117498-PIK3R3F6TDL0 507 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 AKR7A2O43488 359 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 RAF1P04049 648 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 THBS2P35442 1172 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 PPP3R1P63098 170 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 RDH10Q8IZV5 341 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 CPT1CQ8TCG5 803 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 PPP1R14AQ96A00 147 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 TRAF4Q9BUZ4 470 aaPredicted RBP13.7□□□□□ -0.22
LSM6-201ENST00000296581 EXO5Q9H790 373 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 FAM206AQ9NX38 181 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 TNRC6AQ8NDV7 1962 aaKnown RBP13.7□□□□□ -0.22
LSM6-201ENST00000296581 TMEM269A0A1B0GVZ9 245 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 TFECO14948 347 aaPredicted RBP13.7□□□□□ -0.22
LSM6-201ENST00000296581 PAHP00439 452 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 RFX2P48378 723 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 GZMKP49863 264 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 HIST1H3AP68431 136 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 HIST2H3PS2Q5TEC6 136 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 MZT2AQ6P582 158 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 HIST2H3AQ71DI3 136 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 TCTE3Q8IZS6 198 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 GPR137CQ8N3F9 429 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 LILRB2Q8N423 598 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 OR51A4Q8NGJ6 313 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 FNDC9Q8TBE3 224 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 SETD6Q8TBK2 473 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 ZNF837Q96EG3 531 aaPredicted RBP13.7□□□□□ -0.22
LSM6-201ENST00000296581 NIPAL2Q9H841 368 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 BCO1Q9HAY6 547 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 B3GAT2Q9NPZ5 323 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 EMC3Q9P0I2 261 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 OR52A1Q9UKL2 312 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 V9GYH0 126 aa13.7□□□□□ -0.22
LSM6-201ENST00000296581 AKAP13Q12802 2813 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 ANKRD61A6NGH8 418 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 ZNF724A8MTY0 619 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 SNRPD2P62316 118 aaKnown RBP13.69□□□□□ -0.22
LSM6-201ENST00000296581 C3AR1Q16581 482 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 ODF4Q2M2E3 257 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 IDNKQ5T6J7 187 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 FAM27BQ5VT28 67 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 KLHL24Q6TFL4 600 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 ZADH2Q8N4Q0 377 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 FBXW5Q969U6 566 aa13.69□□□□□ -0.22
LSM6-201ENST00000296581 ORAI1Q96D31 301 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms