RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NUDT1P36639 197 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 DLX5P56178 289 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 ZNF441Q8N8Z8 693 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 GSX2Q9BZM3 304 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 PBOV1Q9GZY1 135 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 OPN4Q9UHM6 478 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 IGHV5-10-1A0A0J9YXX1 117 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 QDPRP09417 244 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 ZNF43P17038 809 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 SPINK2P20155 84 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 RAET1LQ5VY80 246 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 TMEM71Q6P5X7 295 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 PPP1R3BQ86XI6 285 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 OR10S1Q8NGN2 331 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 OR2AJ1Q8NGZ0 328 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 WDR77Q9BQA1 342 aaPredicted RBP14.79□□□□□ -0.04
VPS54-201ENST00000272322 MFFQ9GZY8 342 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 HTR3BO95264 441 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 EPHA4P54764 986 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 CLDN17P56750 224 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 GPR85P60893 370 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 WDR45BQ5MNZ6 344 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 MAFAQ8NHW3 353 aaPredicted RBP14.79□□□□□ -0.04
VPS54-201ENST00000272322 UCN2Q96RP3 112 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 CCNL2Q96S94 520 aaPredicted RBP14.79□□□□□ -0.04
VPS54-201ENST00000272322 GPR84Q9NQS5 396 aa14.79□□□□□ -0.04
VPS54-201ENST00000272322 GDF2Q9UK05 429 aaPredicted RBP14.79□□□□□ -0.04
VPS54-201ENST00000272322 LAMA5O15230 3695 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 A0A1W2PQD3 144 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 RPS10-NUDT3A0A1W2PQS6 291 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 LIPT2A6NK58 231 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SULT2B1O00204 365 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 CACNA1HO95180 2353 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 PATE4P0C8F1 98 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ZNF20P17024 532 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 HRH1P35367 487 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SEC61A1P61619 476 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 CPEB2Q7Z5Q1 589 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 FOXRED2Q8IWF2 684 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 OR6N1Q8NGY5 312 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 KCNK17Q96T54 332 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 RBM24Q9BX46 236 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 GAREM1Q9H706 876 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SIT1Q9Y3P8 196 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SPEF1Q9Y4P9 236 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SDCBPO00560 298 aaPredicted RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 TSPAN4O14817 238 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 TO15178 435 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 CSRP1P21291 193 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 DAP3P51398 398 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 HLA-BQ31612 363 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ELFN2Q5R3F8 820 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ADGRE4PQ86SQ3 457 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 BEST3Q8N1M1 668 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 STEAP2Q8NFT2 490 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SLC25A28Q96A46 364 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 MFRPQ9BY79 579 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 PTRH2Q9Y3E5 179 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 ANKUB1A6NFN9 424 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 WIPF3A6NGB9 483 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ZNF726A6NNF4 738 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ADAM10O14672 748 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 LAP3P28838 519 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 BDKRB2P30411 391 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 RAG2P55895 527 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 RPS18P62269 152 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 CHAF1BQ13112 559 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 RNASE10Q5GAN6 216 aaKnown RBP14.78□□□□□ -0.04
VPS54-201ENST00000272322 PXDC1Q5TGL8 231 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 DNM1P34Q6PK57 102 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 TMUB2Q71RG4 321 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SLC36A1Q7Z2H8 476 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ARMC10Q8N2F6 343 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 SPEM1Q8N4L4 309 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 ST8SIA4Q92187 359 aa14.78□□□□□ -0.04
VPS54-201ENST00000272322 PLSCR5A0PG75 271 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 PPP3CBP16298 524 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 OR3A4PP47883 348 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 MRPS10P82664 201 aaKnown RBP14.77□□□□□ -0.04
VPS54-201ENST00000272322 HLXQ14774 488 aaPredicted RBP14.77□□□□□ -0.04
VPS54-201ENST00000272322 ZNF704Q6ZNC4 412 aaPredicted RBP14.77□□□□□ -0.04
VPS54-201ENST00000272322 PLPP5Q8NEB5 264 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 NFAM1Q8NET5 270 aaPredicted RBP14.77□□□□□ -0.04
VPS54-201ENST00000272322 OR6M1Q8NGM8 313 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 POC1BQ8TC44 478 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 RASL10BQ96S79 203 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 ST6GALNAC5Q9BVH7 336 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 C1orf198Q9H425 327 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 IFT46Q9NQC8 304 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 B3GAT1Q9P2W7 334 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 KCNN3Q9UGI6 736 aa14.77□□□□□ -0.04
VPS54-201ENST00000272322 DBHP09172 617 aa14.77□□□□□ -0.05
VPS54-201ENST00000272322 HOXD11P31277 338 aaPredicted RBP14.77□□□□□ -0.05
VPS54-201ENST00000272322 ZNF93P35789 620 aaPredicted RBP14.77□□□□□ -0.05
VPS54-201ENST00000272322 ZNF121P58317 390 aaPredicted RBP14.77□□□□□ -0.05
VPS54-201ENST00000272322 RAP2BP61225 183 aa14.77□□□□□ -0.05
VPS54-201ENST00000272322 ROM1Q03395 351 aa14.77□□□□□ -0.05
VPS54-201ENST00000272322 C12orf45Q8N5I9 185 aaPredicted RBP14.77□□□□□ -0.05
VPS54-201ENST00000272322 GPX8Q8TED1 209 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms