RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ANKRD39Q53RE8 183 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 FBXO46Q6PJ61 603 aaPredicted RBP13.22□□□□□ -0.29
PTPRA-201ENST00000216877 OR2L13Q8N349 312 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 DCAF4L2Q8NA75 395 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 ZPLD1Q8TCW7 415 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 GPX8Q8TED1 209 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 MVB12AQ96EY5 273 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 CNRIP1Q96F85 164 aaPredicted RBP13.22□□□□□ -0.29
PTPRA-201ENST00000216877 CKLFQ9UBR5 152 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 HS3ST3B1Q9Y662 390 aa13.22□□□□□ -0.29
PTPRA-201ENST00000216877 CBY3A6NI87 242 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 GRXCR1A8MXD5 290 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 H0YL77 283 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SOX1O00570 391 aaPredicted RBP13.21□□□□□ -0.29
PTPRA-201ENST00000216877 CDKN3Q16667 212 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SLC39A5Q6ZMH5 540 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SLC35D2Q76EJ3 337 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 DPY19L4Q7Z388 723 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 FJX1Q86VR8 437 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 ARL14EPQ8N8R7 260 aaPredicted RBP13.21□□□□□ -0.29
PTPRA-201ENST00000216877 FBXO22Q8NEZ5 403 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SFXN5Q8TD22 340 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 TFGQ92734 400 aaPredicted RBP13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SRMSQ9H3Y6 488 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 CWH43Q9H720 699 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SOCS5O75159 536 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 GLCEO94923 617 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 HTR2CP28335 458 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 RPL12P30050 165 aaKnown RBP13.21□□□□□ -0.29
PTPRA-201ENST00000216877 CD70P32970 193 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 PPICP45877 212 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 MOGAT2Q3SYC2 334 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 ULK3Q6PHR2 472 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 BTNL8Q6UX41 500 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 LRRC69Q6ZNQ3 347 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SLC35G3Q8N808 338 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 TMEM229BQ8NBD8 167 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 SMARCD2Q92925 531 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 ALG12Q9BV10 488 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 FRRS1LQ9P0K9 344 aa13.21□□□□□ -0.29
PTPRA-201ENST00000216877 GLI4P10075 376 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 MYOGP15173 224 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 HNRNPKP61978 463 aaKnown RBP eCLIP13.21□□□□□ -0.31e-6■■■□□ 16
PTPRA-201ENST00000216877 SLC25A42Q86VD7 318 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 PLPP5Q8NEB5 264 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 CCDC74AQ96AQ1 378 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 MS4A8Q9BY19 250 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 MTHFD2LQ9H903 347 aaPredicted RBP13.21□□□□□ -0.3
PTPRA-201ENST00000216877 SLC22A13Q9Y226 551 aa13.21□□□□□ -0.3
PTPRA-201ENST00000216877 SCN3AQ9NY46 2000 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 DLEU1O43261 78 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 CCL5P13501 91 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 DNASE1L1P49184 302 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 SULT1A2P50226 295 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 VAMP2P63027 116 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 PMPCAQ10713 525 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 TMEM182Q6ZP80 229 aaPredicted RBP13.2□□□□□ -0.3
PTPRA-201ENST00000216877 PAQR4Q8N4S7 273 aaPredicted RBP13.2□□□□□ -0.3
PTPRA-201ENST00000216877 RAB39BQ96DA2 213 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 PRODH2Q9UF12 536 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 SPTBN5Q9NRC6 3674 aaKnown RBP13.2□□□□□ -0.3
PTPRA-201ENST00000216877 SCN5AQ14524 2016 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 GREB1Q4ZG55 1949 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 CSF2RAP15509 400 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 LBX1P52954 281 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 UNQ9370/PRO34162Q6UXP9 181 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.2□□□□□ -0.37e-7■■■■□ 22.4
PTPRA-201ENST00000216877 HIST1H2BLQ99880 126 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 C1orf198Q9H425 327 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 GAB2Q9UQC2 676 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 RTTNQ86VV8 2226 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 H3BQ15 152 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 CCR4P51679 360 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 ARSJQ5FYB0 599 aaPredicted RBP13.2□□□□□ -0.3
PTPRA-201ENST00000216877 ALG10BQ5I7T1 473 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 COX18Q8N8Q8 333 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 SAGE1Q9NXZ1 904 aa13.2□□□□□ -0.3
PTPRA-201ENST00000216877 CCL16O15467 120 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 KLF4O43474 513 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 DFFBO76075 338 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PET100P0DJ07 73 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 LMAN2Q12907 356 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 IAH1Q2TAA2 248 aaPredicted RBP13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PRSS54Q6PEW0 395 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 OR6X1Q8NH79 312 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 FAM210BQ96KR6 192 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 WNT5BQ9H1J7 359 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PRDM7Q9NQW5 492 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PARP11Q9NR21 331 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 FBXO34Q9NWN3 711 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 KLK13Q9UKR3 277 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 HIF3AQ9Y2N7 669 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF840PA6NDX5 716 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PRR32B1ATL7 298 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 SLC33A1O00400 549 aaPredicted RBP13.19□□□□□ -0.3
PTPRA-201ENST00000216877 PPP1CCP36873 323 aaKnown RBP13.19□□□□□ -0.3
PTPRA-201ENST00000216877 DIO1P49895 249 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 TMEM33P57088 247 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 DLK1P80370 383 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 FAM189A2Q15884 450 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms