RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 TNFRSF1AP19438 455 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 CRABP1P29762 137 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 HILS1P60008 231 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 SEC61A1P61619 476 aaKnown RBP11.73□□□□□ -0.53
LINC00339-211ENST00000641009 OR2T2Q6IF00 324 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 LEG1Q6P5S2 330 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 OR6V1Q8N148 313 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 NANPQ8TBE9 248 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 ZFAND2BQ8WV99 257 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 SIGLEC11Q96RL6 698 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 NMNAT3Q96T66 252 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 SLC6A7Q99884 636 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 OR52D1Q9H346 318 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 SRA1Q9HD15 236 aaKnown RBP11.73□□□□□ -0.53
LINC00339-211ENST00000641009 IL19Q9UHD0 177 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 ATPIF1Q9UII2 106 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 MAGEL2Q9UJ55 1249 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 B9D1Q9UPM9 204 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 PPP1R3CQ9UQK1 317 aa11.73□□□□□ -0.53
LINC00339-211ENST00000641009 HSD17B1P14061 328 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 HIST1H1CP16403 213 aaKnown RBP11.72□□□□□ -0.53
LINC00339-211ENST00000641009 GATA3P23771 443 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 SLC6A6P31641 620 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 RGS6P49758 472 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 SMIM11AP58511 58 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 BTG1P62324 171 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 ACTG1P63261 375 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 HIST1H3AP68431 136 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 ZMYND11Q15326 602 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 RFX4Q33E94 735 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 HIST2H3PS2Q5TEC6 136 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 DNM1P34Q6PK57 102 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 C12orf54Q6X4T0 127 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 FBXW12Q6X9E4 464 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 USP43Q70EL4 1123 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 HIST2H3AQ71DI3 136 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 JAZF1Q86VZ6 243 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 SPICQ8N5J4 248 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 ATG16L2Q8NAA4 619 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 GJC3Q8NFK1 279 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 OR10AD1Q8NGE0 317 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 OR4K13Q8NH42 304 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 C22orf15Q8WYQ4 148 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 HDHD2Q9H0R4 259 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 FN3KQ9H479 309 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 WDR76Q9H967 626 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 RPRD1BQ9NQG5 326 aaKnown RBP11.72□□□□□ -0.53
LINC00339-211ENST00000641009 MMP26Q9NRE1 261 aa11.72□□□□□ -0.53
LINC00339-211ENST00000641009 J3QW42 95 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 ARPC2O15144 300 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 SURF4O15260 269 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 OR10H3O60404 316 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 FOXH1O75593 365 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 RENP00797 406 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 FSHBP01225 129 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 FPR3P25089 353 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 RRM2P31350 389 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 PRSS12P56730 875 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 COX10Q12887 443 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 RSPO1Q2MKA7 263 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 PGM2L1Q6PCE3 622 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 CFAP77Q6ZQR2 320 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 CPLX4Q7Z7G2 160 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 LRRC28Q86X40 367 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 LINC00346Q8IVM7 164 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 PGAM4Q8N0Y7 254 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 KLHL36Q8N4N3 616 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 BHLHE23Q8NDY6 225 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 SDR9C7Q8NEX9 313 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 SLC26A10Q8NG04 563 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 OR5L1Q8NGL2 311 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 ZNF420Q8TAQ5 688 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 APOBEC3DQ96AK3 386 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 NSMCE2Q96MF7 247 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 COQ7Q99807 217 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 IFT27Q9BW83 186 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 NSRP1Q9H0G5 558 aaKnown RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 PATZ1Q9HBE1 687 aaKnown RBP11.71□□□□□ -0.53
LINC00339-211ENST00000641009 GCM1Q9NP62 436 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 CD300AQ9UGN4 299 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 PKD1L1Q8TDX9 2849 aa11.71□□□□□ -0.53
LINC00339-211ENST00000641009 IGHV3-64DA0A0J9YX35 117 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 H0YL77 283 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 TRAPPC2LH3BP13 241 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 TMEM178BH3BS89 294 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 ARPC3O15145 178 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 FABP3P05413 133 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 CFPP27918 469 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 SLC6A9P48067 706 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 MMP16P51512 607 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 TMEM155Q4W5P6 130 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 SAMD4BQ5PRF9 694 aaKnown RBP11.7□□□□□ -0.54
LINC00339-211ENST00000641009 SLC18B1Q6NT16 456 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 BPIFB2Q8N4F0 458 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 DEFB108BQ8NET1 73 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 OR8G5Q8NG78 346 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 FAM216AQ8WUB2 273 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 MCUR1Q96AQ8 359 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 MEGF10Q96KG7 1140 aa11.7□□□□□ -0.54
LINC00339-211ENST00000641009 ZNF582Q96NG8 517 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms