RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 WDR13Q9H1Z4 485 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 RHBDD3Q9Y3P4 386 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 THADAQ6YHU6 1953 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 KIF26BQ2KJY2 2108 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 A6NIZ1 184 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 RAP1BP61224 184 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 RAP1AP62834 184 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 TAF13Q15543 124 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 PCK2Q16822 640 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZNF260Q3ZCT1 412 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 PABPC1L2AQ5JQF8 200 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 CORO6Q6QEF8 472 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ACOT7LQ6ZUV0 252 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZDHHC22Q8N966 263 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ACBD4Q8NC06 268 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZNF248Q8NDW4 579 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 OR4D6Q8NGJ1 314 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZDHHC19Q8WVZ1 309 aaPredicted RBP18■□□□□ 0.47
SYNGAP1-227ENST00000638142 VRK1Q99986 396 aaPredicted RBP18■□□□□ 0.47
SYNGAP1-227ENST00000638142 NKX2-4Q9H2Z4 354 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 TAS2R3Q9NYW6 316 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 MYEF2Q9P2K5 600 aaKnown RBP18■□□□□ 0.47
SYNGAP1-227ENST00000638142 PRELID3BQ9Y3B1 194 aa18■□□□□ 0.47
SYNGAP1-227ENST00000638142 COL5A1P20908 1838 aaPredicted RBP18■□□□□ 0.47
SYNGAP1-227ENST00000638142 CPED1A4D0V7 1026 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 IL2RAP01589 272 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 ABCD3P28288 659 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 LUMP51884 338 aaPredicted RBP17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 CXADRP78310 365 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAM74A1Q5RGS3 127 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 PDSS1Q5T2R2 415 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 DCXRQ7Z4W1 244 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 OR4S1Q8NGB4 309 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 ST7LQ8TDW4 575 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 OR11A1Q9GZK7 315 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 COPS7AQ9UBW8 275 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 XIRP2A4UGR9 3374 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 TMEM269A0A1B0GVZ9 245 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 PLATP00750 562 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 CNR1P21554 472 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 DEFA5Q01523 94 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 DLX2Q07687 328 aaPredicted RBP17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 NKPD1Q17RQ9 610 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 CDNFQ49AH0 187 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 SLC29A4Q7RTT9 530 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 FJX1Q86VR8 437 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 GKN2Q86XP6 184 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 PPP1R1CQ8WVI7 109 aa17.99■□□□□ 0.47
SYNGAP1-227ENST00000638142 RNF222A6NCQ9 220 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAM74A7A6NL05 159 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 RAB27BO00194 218 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 SOX1O00570 391 aaPredicted RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FADS1O60427 444 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 CSN2P05814 226 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 DLSTP36957 453 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 MC2RQ01718 297 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAM74A3Q4VXF1 159 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 C3orf33Q6P1S2 294 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAHD2BQ6P2I3 314 aaPredicted RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 CD163Q86VB7 1156 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 BPIFCQ8NFQ6 507 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 MITD1Q8WV92 249 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAHD2AQ96GK7 314 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZNF175Q9Y473 711 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FREM3P0C091 2139 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FTCDNL1E5RQL4 147 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 H3BMH7 237 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 TDGQ13569 410 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 PRAMEF17Q5VTA0 474 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 TRAPPC6BQ86SZ2 158 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 OR6S1Q8NH40 331 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 FAM46BQ96A09 425 aa17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZNF471Q9BX82 626 aaPredicted RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 NKX6-2Q9C056 277 aaPredicted RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 PURGQ9UJV8 347 aaKnown RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 KLF2Q9Y5W3 355 aaPredicted RBP17.98■□□□□ 0.47
SYNGAP1-227ENST00000638142 CCSO14618 274 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 HLA-DOBP13765 273 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 EN2P19622 333 aaPredicted RBP17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 BDKRB2P30411 391 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 CTAG1AP78358 180 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 PPP1R1AQ13522 171 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 LRRC37A5PQ49AS3 106 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 OR1N1Q8NGS0 311 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 ASB10Q8WXI3 467 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZDHHC12Q96GR4 267 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 PHB2Q99623 299 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 CST11Q9H112 138 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 C9orf170A2RU37 121 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 EIF1AYO14602 144 aaKnown RBP17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 SMAD9O15198 467 aaKnown RBP17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 GP1BAP07359 652 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 HSD11B1P28845 292 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 EIF1AXP47813 144 aaKnown RBP17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 MMP16P51512 607 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 EFNA3P52797 238 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZP4Q12836 540 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 SQSTM1Q13501 440 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 NSDHLQ15738 373 aa17.97■□□□□ 0.47
SYNGAP1-227ENST00000638142 ZNF813Q6ZN06 617 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms