RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SYT9Q86SS6 491 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 EGFL6Q8IUX8 553 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 MS4A15Q8N5U1 240 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 ZNF676Q8N7Q3 588 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 KBTBD8Q8NFY9 601 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 BARHL1Q9BZE3 327 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 SLIRPQ9GZT3 109 aaKnown RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 PLEK2Q9NYT0 353 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 MALT1Q9UDY8 824 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 MBD3L4A6NDZ8 208 aaPredicted RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 MBD3L3A6NE82 208 aaPredicted RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 MBD3L5A6NJ08 208 aaPredicted RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 OR6C65A6NJZ3 312 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 E9PLN8 166 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 PIN1P1O15428 100 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 HLA-HP01893 362 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 SOX2P48431 317 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 PER3P56645 1201 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 PSG4Q00888 419 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 LSAMPQ13449 338 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 TSC22D1Q15714 1073 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 ZMAT1Q5H9K5 638 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 C1orf185Q5T7R7 199 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 NCCRP1Q6ZVX7 275 aaPredicted RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 DOLPP1Q86YN1 238 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 MBD3L2Q8NHZ7 208 aaPredicted RBP17.6■□□□□ 0.41
CLN3-250ENST00000636839 ZNF319Q9P2F9 582 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 SH3BGRL2Q9UJC5 107 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 TINAGQ9UJW2 476 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 OR52A1Q9UKL2 312 aa17.6■□□□□ 0.41
CLN3-250ENST00000636839 ACACBO00763 2458 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 F5H5K5 113 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 LOC110117498-PIK3R3F6TDL0 507 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 CD1AP06126 327 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 HSD11B1P28845 292 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 HIKESHIQ53FT3 197 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 ELFN2Q5R3F8 820 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 ATF6BQ99941 703 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 NOX3Q9HBY0 568 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 GSTK1Q9Y2Q3 226 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 TTLL8A6PVC2 850 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 WDR1O75083 606 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 GABRA1P14867 456 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 ZNF121P58317 390 aaPredicted RBP17.59■□□□□ 0.41
CLN3-250ENST00000636839 MRPL28Q13084 256 aaKnown RBP17.59■□□□□ 0.41
CLN3-250ENST00000636839 NR2C2APQ86WQ0 139 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 STARD4Q96DR4 205 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 WNT5BQ9H1J7 359 aa17.59■□□□□ 0.41
CLN3-250ENST00000636839 DDX28Q9NUL7 540 aaKnown RBP17.59■□□□□ 0.41
CLN3-250ENST00000636839 FIGNL2A6NMB9 653 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 HSPB2A8KAH6 182 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 SGCEO43556 437 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 GPRIN2O60269 458 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 MMP7P09237 267 aaPredicted RBP17.58■□□□□ 0.4
CLN3-250ENST00000636839 PAX7P23759 505 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 MMP16P51512 607 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 HSPB2Q16082 182 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 SFRP5Q5T4F7 317 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 PCSK4Q6UW60 755 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 OR2H1Q9GZK4 316 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 NOX4Q9NPH5 578 aa17.58■□□□□ 0.4
CLN3-250ENST00000636839 TMEM212A6NML5 194 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 SYNGR3O43761 229 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 SLC19A2O60779 497 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 IGHV1-2P23083 117 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 MPGP29372 298 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 CX3CR1P49238 355 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 CCR9P51686 369 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 KLRB1Q12918 225 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 TRAM1Q15629 374 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 YIF1BQ5BJH7 314 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 OR2A2Q6IF42 318 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 UNQ9370/PRO34162Q6UXP9 181 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 CPEB3Q8NE35 698 aaKnown RBP17.57■□□□□ 0.4
CLN3-250ENST00000636839 COQ7Q99807 217 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 SOX7Q9BT81 388 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 PBOV1Q9GZY1 135 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 OPN3Q9H1Y3 402 aaPredicted RBP17.57■□□□□ 0.4
CLN3-250ENST00000636839 TIMM10BQ9Y5J6 103 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 INTS1Q8N201 2190 aaKnown RBP17.57■□□□□ 0.4
CLN3-250ENST00000636839 TMEM8BA6NDV4 472 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 ZNF879B4DU55 563 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 P2RY10O00398 339 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 LMX1BO60663 402 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 LYZL6O75951 148 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 TTRP02766 147 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 GALP22466 123 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 HGFACQ04756 655 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 ZNF627Q7L945 461 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 ZNF283Q8N7M2 679 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 ZNF610Q8N9Z0 462 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 TBC1D15Q8TC07 691 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 SLC24A3Q9HC58 644 aa17.57■□□□□ 0.4
CLN3-250ENST00000636839 A0A1W2PR80 420 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 CASKO14936 926 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 FARS2O95363 451 aaKnown RBP17.56■□□□□ 0.4
CLN3-250ENST00000636839 CGAP01215 116 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 OCM2P0CE71 109 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 TMIGD3P0DMS9 266 aaPredicted RBP17.56■□□□□ 0.4
CLN3-250ENST00000636839 GLI4P10075 376 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms