RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CCL1P22362 96 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 PTBP1P26599 531 aaKnown RBP eCLIP9.3□□□□□ -0.92
CLN3-248ENST00000636355 NTF4P34130 210 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 OR3A2P47893 321 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 BMXP51813 675 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 CAPZA1P52907 286 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 MFGE8Q08431 387 aaPredicted RBP9.3□□□□□ -0.92
CLN3-248ENST00000636355 TAF13Q15543 124 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 SGCAQ16586 387 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 TBR1Q16650 682 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 CEACAM16Q2WEN9 425 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 ACSF3Q4G176 576 aaPredicted RBP9.3□□□□□ -0.92
CLN3-248ENST00000636355 SPANXN2Q5MJ10 180 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 ELFN2Q5R3F8 820 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 C1QTNF12Q5T7M4 302 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 SFXN4Q6P4A7 337 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 P4HA3Q7Z4N8 544 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 TUSC5Q8IXB3 177 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 SLC22A24Q8N4F4 322 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 SPTSSAQ969W0 71 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 TMEM106AQ96A25 262 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 BOD1Q96IK1 185 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 KCNJ15Q99712 375 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 ZCCHC4Q9H5U6 513 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 CKLFQ9UBR5 152 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 PLEKHB1Q9UF11 243 aaPredicted RBP9.3□□□□□ -0.92
CLN3-248ENST00000636355 OR52A1Q9UKL2 312 aa9.3□□□□□ -0.92
CLN3-248ENST00000636355 FREM1Q5H8C1 2179 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 LOC400499M0QZD8 3231 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 MBD3L4A6NDZ8 208 aaPredicted RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 MBD3L3A6NE82 208 aaPredicted RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 OR6C6A6NF89 314 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 MBD3L5A6NJ08 208 aaPredicted RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 RER1O15258 196 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 LRRTM2O43300 516 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 SGCEO43556 437 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 SLC19A2O60779 497 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 PNPP00491 289 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 PDGFAP04085 211 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 COX5BP10606 129 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 B4GALT1P15291 398 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CRYGSP22914 178 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 MPGP29372 298 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 C3AR1Q16581 482 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 KRTAP27-1Q3LI81 207 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 SLC36A2Q495M3 483 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 TSPO2Q5TGU0 170 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 NSUN5P2Q63ZY6 315 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CORO6Q6QEF8 472 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 DRAM2Q6UX65 266 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 FAM214BQ7L5A3 538 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 LINGO2Q7L985 606 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CCDC190Q86UF4 302 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CCDC36Q8IYA8 594 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 ZNF100Q8IYN0 542 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 NKAIN3Q8N8D7 197 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 OR52H1Q8NGJ2 320 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 OR13C5Q8NGS8 318 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 OR6K3Q8NGY3 331 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 MBD3L2Q8NHZ7 208 aaPredicted RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 TSEN15Q8WW01 171 aaKnown RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 NANOS1Q8WY41 292 aaKnown RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 C10orf35Q96D05 121 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 ABHD17AQ96GS6 310 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CMTM3Q96MX0 182 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 TCF7L1Q9HCS4 588 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 NOX4Q9NPH5 578 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 SLC7A10Q9NS82 523 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CENPMQ9NSP4 180 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 PLEK2Q9NYT0 353 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 ABRACLQ9P1F3 81 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 RABL2AQ9UBK7 228 aaPredicted RBP9.29□□□□□ -0.92
CLN3-248ENST00000636355 FBXL3Q9UKT7 428 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 RABL2BQ9UNT1 228 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 FOXJ3Q9UPW0 622 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 DHDHQ9UQ10 334 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 TP53TG5Q9Y2B4 290 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 CMAHPQ9Y471 501 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 TIMM10BQ9Y5J6 103 aa9.29□□□□□ -0.92
CLN3-248ENST00000636355 GTF3C1Q12789 2109 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 FRYQ5TBA9 3013 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 A0A0G2JK05 382 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SHISA3A0PJX4 238 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 MEGF11A6BM72 1044 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 AIPO00170 330 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SYNGR3O43761 229 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 DOK2O60496 412 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 TGM6O95932 706 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 TTRP02766 147 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 BMP4P12644 408 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SRMP19623 302 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 APEX1P27695 318 aaKnown RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 CX3CR1P49238 355 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 TGFBR3Q03167 851 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 MXD1Q05195 221 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 INSL4Q14641 139 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 FBXW9Q5XUX1 488 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 ZNF324BQ6AW86 544 aaPredicted RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 METAP1DQ6UB28 335 aaPredicted RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 TFAP2EQ6VUC0 442 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms