RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 UCP2P55851 309 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 SNRPD2P62316 118 aaKnown RBP15.58■□□□□ 0.08
CLN3-239ENST00000628023 HIST1H3AP68431 136 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 EIF2B1Q14232 305 aaKnown RBP15.58■□□□□ 0.08
CLN3-239ENST00000628023 HIST2H3PS2Q5TEC6 136 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 HIST2H3AQ71DI3 136 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 GID4Q8IVV7 300 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 OR8J1Q8NGP2 316 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 COX4I2Q96KJ9 171 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 C4orf45Q96LM5 186 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 MBOAT4Q96T53 435 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 ELOVL3Q9HB03 270 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 SMPD3Q9NY59 655 aaPredicted RBP15.58■□□□□ 0.08
CLN3-239ENST00000628023 ATPIF1Q9UII2 106 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 FZR1Q9UM11 496 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 GMPPBQ9Y5P6 360 aa15.58■□□□□ 0.08
CLN3-239ENST00000628023 VPS13CQ709C8 3753 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 SLC22A31A6NKX4 558 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 H7C1Q1 480 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 SELENOFO60613 162 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 DBHP09172 617 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 PSKH1P11801 424 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 CDKN1AP38936 164 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 WNT5AP41221 380 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 ECH1Q13011 328 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 TAF13Q15543 124 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 TEX30Q5JUR7 227 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 NXNL2Q5VZ03 156 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 SPATC1Q76KD6 591 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 SHFQ7M4L6 423 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 DPY19L4Q7Z388 723 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 BCDIN3DQ7Z5W3 292 aaKnown RBP15.57■□□□□ 0.08
CLN3-239ENST00000628023 ZNF555Q8NEP9 628 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 OR1J1Q8NGS3 322 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 MAP6Q96JE9 813 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 HRASLS5Q96KN8 279 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 RDH12Q96NR8 316 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 COPS4Q9BT78 406 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 CACNG6Q9BXT2 260 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 GSX2Q9BZM3 304 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 VCXQ9H320 206 aa15.57■□□□□ 0.08
CLN3-239ENST00000628023 NSD1Q96L73 2696 aaPredicted RBP15.57■□□□□ 0.08
CLN3-239ENST00000628023 CCDC182A6NF36 153 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 B9A039 149 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 F5H5K5 113 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 SMAD7O15105 426 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 LY6G6DO95868 133 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 CD8AP01732 235 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 MRPL3P09001 348 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 SELENOVP59797 346 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 ERVS71-1P61550 626 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 PCK2Q16822 640 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 SPATA46Q5T0L3 261 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 RFPL4BQ6ZWI9 263 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 MEPCEQ7L2J0 689 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 TIGD4Q8IY51 512 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 ZNF101Q8IZC7 436 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 PACRGLQ8N7B6 248 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 SPTSSAQ969W0 71 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 MRPL24Q96A35 216 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 SLAMF6Q96DU3 332 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 DCLRE1CQ96SD1 692 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 CNN2Q99439 309 aaKnown RBP15.56■□□□□ 0.08
CLN3-239ENST00000628023 SYT3Q9BQG1 590 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 MARCH7Q9H992 704 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 CENPMQ9NSP4 180 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 DNAJC27Q9NZQ0 273 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 PMF1-BGLAPU3KQ54 211 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 RTTNQ86VV8 2226 aa15.56■□□□□ 0.08
CLN3-239ENST00000628023 A0A1W2PPW3 197 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 GCH1P30793 250 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 PTH2RP49190 550 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 SLC34A1Q06495 639 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 EFNB3Q15768 340 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 AADACL4Q5VUY2 407 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 C11orf71Q6IPW1 123 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 TRUB1Q8WWH5 349 aaKnown RBP15.55■□□□□ 0.08
CLN3-239ENST00000628023 TRMT61AQ96FX7 289 aaKnown RBP15.55■□□□□ 0.08
CLN3-239ENST00000628023 TEAD3Q99594 435 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 MRPL37Q9BZE1 423 aaKnown RBP15.55■□□□□ 0.08
CLN3-239ENST00000628023 RNPEPL1Q9HAU8 725 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 DYNLRB1Q9NP97 96 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 PNRC2Q9NPJ4 139 aaKnown RBP15.55■□□□□ 0.08
CLN3-239ENST00000628023 DUSP13Q9UII6 198 aa15.55■□□□□ 0.08
CLN3-239ENST00000628023 USF3Q68DE3 2245 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 LOC100130705A0A1B0GUX0 176 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 ZNF878C9JN71 531 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 CASQ2O14958 399 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 LYNP07948 512 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 SLC15A1P46059 708 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 SLC6A9P48067 706 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 RGS6P49758 472 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 ATP5J2P56134 94 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 TPTEP56180 551 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 KLF3P57682 345 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 PPP1CBP62140 327 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 EFNB1P98172 346 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 OGFRL1Q5TC84 451 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 SLC16A9Q7RTY1 509 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 C1orf174Q8IYL3 243 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms