RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TUSC5Q8IXB3 177 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 BHLHE23Q8NDY6 225 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 OR5D14Q8NGL3 314 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 THRSPQ92748 146 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SRXN1Q9BYN0 137 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SRRQ9GZT4 340 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SPTBN1Q01082 2364 aaKnown RBP13.97□□□□□ -0.17
CPSF1-213ENST00000620219 METTL21EPA6NDL7 271 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 CSF3P09919 207 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 ARSBP15848 533 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SCRN3Q0VDG4 424 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SFRP4Q6FHJ7 346 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-213ENST00000620219 C19orf48Q6RUI8 117 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 OR6X1Q8NH79 312 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 C4orf45Q96LM5 186 aa13.97□□□□□ -0.17
CPSF1-213ENST00000620219 MRPL22Q9NWU5 206 aaKnown RBP13.97□□□□□ -0.17
CPSF1-213ENST00000620219 SLC22A20A6NK97 555 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 PTTG1O95997 202 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 TMEM225BP0DP42 221 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 CFL1P23528 166 aaKnown RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 PTGDSP41222 190 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 ZNF79Q15937 498 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 NKAPLQ5M9Q1 402 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 C11orf88Q6PI97 169 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 CREB3L2Q70SY1 520 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 GDPD1Q8N9F7 314 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 INTS12Q96CB8 462 aaKnown RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 A0A1W2PNU3 283 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 FTCDNL1E5RQL4 147 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 RAB3AP20336 220 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 MFGE8Q08431 387 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 SLC26A10Q8NG04 563 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 DIDO1Q9BTC0 2240 aaKnown RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 SSNA1O43805 119 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 STAC2Q6ZMT1 411 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 HAVCR2Q8TDQ0 301 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 FRMD6Q96NE9 622 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 THAP7Q9BT49 309 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-213ENST00000620219 PBOV1Q9GZY1 135 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 TMEM138Q9NPI0 162 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 R4GMQ9 66 aa13.96□□□□□ -0.17
CPSF1-213ENST00000620219 M0R135 149 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 NPIPB7O75200 414 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 DBX2Q6ZNG2 339 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 LRRC28Q86X40 367 aaPredicted RBP13.96□□□□□ -0.18
CPSF1-213ENST00000620219 LRRC75AQ8NAA5 344 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 CAPSLQ8WWF8 208 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF799Q96GE5 643 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 FOXB1Q99853 325 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 OR10A2Q9H208 303 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 ST6GALNAC2Q9UJ37 374 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 V9GYH0 126 aa13.96□□□□□ -0.18
CPSF1-213ENST00000620219 GGT3PA6NGU5 568 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 MKRN2OSH3BPM6 223 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 SMAD9O15198 467 aaKnown RBP13.95□□□□□ -0.18
CPSF1-213ENST00000620219 TXNDC12O95881 172 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 APOC1P02654 83 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 PIGCQ92535 297 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 PIGTQ969N2 578 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 LYRM1O43325 122 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 UPK3AO75631 287 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 CCL2P13500 99 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 CD82P27701 267 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 EVX1P49640 407 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 NR2C2APQ86WQ0 139 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 MINDY2Q8NBR6 621 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 ACBD4Q8NC06 268 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 PGLYRP3Q96LB9 341 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 TBCCD1Q9NVR7 557 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 TRAF3IP2O43734 574 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-213ENST00000620219 LRP3O75074 770 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 PMS2P2O95744 297 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 SUCLG1P53597 346 aaKnown RBP13.95□□□□□ -0.18
CPSF1-213ENST00000620219 SCGB2B2Q4G0G5 96 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 LINC00299Q6ZSB3 139 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF519Q8TB69 540 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 CPT1CQ8TCG5 803 aa13.95□□□□□ -0.18
CPSF1-213ENST00000620219 IGLV1-36A0A0B4J1U3 117 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 IGHV3-64DA0A0J9YX35 117 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ASCL5Q7RTU5 278 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 FCAMRQ8WWV6 532 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 KCNK17Q96T54 332 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF649Q9BS31 505 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 KCNK15Q9H427 330 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 IFT46Q9NQC8 304 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 MTRF1O75570 445 aaKnown RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 HLA-HP01893 362 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF774Q6NX45 483 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 RNF128Q8TEB7 428 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 NMNAT2Q9BZQ4 307 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF222Q9UK12 451 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 DMDP11532 3685 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 CRTAPO75718 401 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 KDM4BO94953 1096 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ABHD16AO95870 558 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 IFNA6P05013 189 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 DBHP09172 617 aa13.94□□□□□ -0.18
CPSF1-213ENST00000620219 UBCP0CG48 685 aaKnown RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 RSPO4Q2I0M5 234 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF485Q8NCK3 441 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms