RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 NGFP01138 241 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 HLA-DQA2P01906 255 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 HMGN1P05114 100 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 ZNF823P16415 610 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 PRKACGP22612 351 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 GIFP27352 417 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 GCH1P30793 250 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 FMO3P31513 532 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 PYCR1P32322 319 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 LOXL1Q08397 574 aaPredicted RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 GINS1Q14691 196 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 MAD2L1BPQ15013 274 aaPredicted RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 PCGF3Q3KNV8 242 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 LINC01590Q5TEZ4 76 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 CFAP77Q6ZQR2 320 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 ZCCHC24Q8N2G6 241 aaKnown RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 ZNF786Q8N393 782 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 IQCF1Q8N6M8 205 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 OR9Q1Q8NGQ5 310 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 KLF14Q8TD94 323 aaPredicted RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 OR2J1Q9GZK6 312 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 PNRC2Q9NPJ4 139 aaKnown RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 PAPOLBQ9NRJ5 636 aaKnown RBP13.83□□□□□ -0.2
LSM4-206ENST00000600289 NKIRAS2Q9NYR9 191 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 TAAR3PQ9P1P4 343 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 KIF17Q9P2E2 1029 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 COMMD3-BMI1R4GMX3 469 aa13.83□□□□□ -0.2
LSM4-206ENST00000600289 C17orf100A8MU93 164 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 G3V2T6 193 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 SMAD7O15105 426 aaKnown RBP13.82□□□□□ -0.2
LSM4-206ENST00000600289 SURF4O15260 269 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 DAOP14920 347 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 LIPAP38571 399 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 ALDH3B1P43353 468 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 DAPP51397 102 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 MMP15P51511 669 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 ESRRGP62508 458 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 MRPS11P82912 194 aaKnown RBP13.82□□□□□ -0.2
LSM4-206ENST00000600289 DBPQ10586 325 aaPredicted RBP13.82□□□□□ -0.2
LSM4-206ENST00000600289 NKPD1Q17RQ9 610 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 TMEM255AQ5JRV8 349 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 ACSM5Q6NUN0 579 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 CORO6Q6QEF8 472 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 LINC00346Q8IVM7 164 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 OR2AJ1Q8NGZ0 328 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 SNX33Q8WV41 574 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 ATF6BQ99941 703 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 PIMREGQ9BSJ6 248 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 CDADC1Q9BWV3 514 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 MARCH7Q9H992 704 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 CYSLTR2Q9NS75 346 aa13.82□□□□□ -0.2
LSM4-206ENST00000600289 DDX28Q9NUL7 540 aaKnown RBP13.82□□□□□ -0.2
LSM4-206ENST00000600289 CRLF1O75462 422 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 MT-ND5P03915 603 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 ADH4P08319 380 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 PAICSP22234 425 aaKnown RBP13.81□□□□□ -0.2
LSM4-206ENST00000600289 POU1F1P28069 291 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 MPV17P39210 176 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 ENTPD1P49961 510 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 RSPO1Q2MKA7 263 aaPredicted RBP13.81□□□□□ -0.2
LSM4-206ENST00000600289 SPATA46Q5T0L3 261 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 KDM4DQ6B0I6 523 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 COLCA1Q6ZS62 124 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.81□□□□□ -0.2
LSM4-206ENST00000600289 ZDHHC13Q8IUH4 622 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 ICA1LQ8NDH6 482 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 ZNF540Q8NDQ6 660 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 UBASH3BQ8TF42 649 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 LRTOMTQ8WZ04 291 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 SLC7A6Q92536 515 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 APOBEC3DQ96AK3 386 aaPredicted RBP13.81□□□□□ -0.2
LSM4-206ENST00000600289 MAP6Q96JE9 813 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 OSBPL10Q9BXB5 764 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 TEX12Q9BXU0 123 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 TPK1Q9H3S4 243 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 HINT3Q9NQE9 182 aaKnown RBP13.81□□□□□ -0.2
LSM4-206ENST00000600289 ENOPH1Q9UHY7 261 aa13.81□□□□□ -0.2
LSM4-206ENST00000600289 TVP23AA6NH52 213 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 PRODHO43272 600 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 GLCEO94923 617 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 GYPBP06028 91 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 DBHP09172 617 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 CLUP10909 449 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 NAT2P11245 290 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 KITLGP21583 273 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 OTX1P32242 354 aaPredicted RBP13.8□□□□□ -0.2
LSM4-206ENST00000600289 NR4A2P43354 598 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 CRISP1P54107 249 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 KRTAP1-1Q07627 177 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 FAM209AQ5JX71 171 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 ZFP1Q6P2D0 407 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 C10orf67Q8IYJ2 551 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 OR51L1Q8NGJ5 315 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 OR5L1Q8NGL2 311 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 PTP4A1Q93096 173 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 CENPNQ96H22 339 aaPredicted RBP13.8□□□□□ -0.2
LSM4-206ENST00000600289 PITX2Q99697 317 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 HCAR1Q9BXC0 346 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 C1QTNF5Q9BXJ0 243 aa13.8□□□□□ -0.2
LSM4-206ENST00000600289 WDR76Q9H967 626 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms