RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TERB2Q8NHR7 220 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 ARPC5LQ9BPX5 153 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 PAPPAQ13219 1627 aa18.58■□□□□ 0.57
UPF1-207ENST00000599848 A0A096LPE4 126 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 A0A1W2PPZ6 126 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 PRSS37A4D1T9 235 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 MASP2O00187 686 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 HPNP05981 417 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 ACKR3P25106 362 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 NHLRC1Q6VVB1 395 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 OR5D13Q8NGL4 314 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 DEDD2Q8WXF8 326 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 PDFQ9HBH1 243 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 CEPT1Q9Y6K0 416 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 S100A8P05109 93 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 PNPLA1Q8N8W4 532 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 OR52N5Q8NH56 324 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 RPEQ96AT9 228 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 PCK2Q16822 640 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 LILRA3Q8N6C8 439 aaPredicted RBP18.58■□□□□ 0.56
UPF1-207ENST00000599848 TMEM56Q96MV1 263 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 ONECUT1Q9UBC0 465 aa18.58■□□□□ 0.56
UPF1-207ENST00000599848 IGHV1OR15-9A0A0B4J2B8 117 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 TMEM30CPA0ZSE6 113 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 ST8SIA3O43173 380 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 GDNFP39905 211 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 THNSL2Q86YJ6 484 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 CNR1P21554 472 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 NKX2-1P43699 371 aaPredicted RBP18.57■□□□□ 0.56
UPF1-207ENST00000599848 RPL34P49207 117 aaKnown RBP18.57■□□□□ 0.56
UPF1-207ENST00000599848 CCSMST1Q4G0I0 132 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 TRNP1Q6NT89 227 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 ACSM5Q6NUN0 579 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 COMMD7Q86VX2 200 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 SYS1Q8N2H4 156 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 OR10AD1Q8NGE0 317 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 CMC2Q9NRP2 79 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 SMIM17P0DL12 118 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 LIPCP11150 499 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 TMEM65Q6PI78 240 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 DBX2Q6ZNG2 339 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.57■□□□□ 0.56
UPF1-207ENST00000599848 MOB3AQ96BX8 217 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 BARX1Q9HBU1 254 aaPredicted RBP18.57■□□□□ 0.56
UPF1-207ENST00000599848 NRXN3Q9Y4C0 1643 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 APEX1P27695 318 aaKnown RBP18.57■□□□□ 0.56
UPF1-207ENST00000599848 TRIM23P36406 574 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 OR2G6Q5TZ20 316 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 MOB3BQ86TA1 216 aa18.57■□□□□ 0.56
UPF1-207ENST00000599848 IGHV1OR21-1A0A087WYE8 117 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 PIPP12273 146 aaPredicted RBP18.56■□□□□ 0.56
UPF1-207ENST00000599848 UBE2KP61086 200 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 SSX2Q16385 188 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 ETFRF1Q6IPR1 90 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 FAM58AQ8N1B3 248 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 ISL2Q96A47 359 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 PSORS1C1Q9UIG5 152 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 FOLR1P15328 257 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 SRMP19623 302 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 DIO1P49895 249 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 BTG2P78543 158 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 KDM3BQ7LBC6 1761 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 NOXO1Q8NFA2 376 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 OR51E1Q8TCB6 317 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 ST8SIA4Q92187 359 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 SEC22CQ9BRL7 303 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 IKZF5Q9H5V7 419 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 R4GMQ9 66 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 IGLV3-25P01717 112 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 OR5M9Q8NGP3 310 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 TCEAL7Q9BRU2 100 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 TPPP3Q9BW30 176 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 AMBRA1Q9C0C7 1298 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 EBF1Q9UH73 591 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 NCR1O76036 304 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 COX6B1P14854 86 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 OMGP23515 440 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 SRD5A2P31213 254 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 NPY4RP50391 375 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 EMX1Q04741 257 aaPredicted RBP18.56■□□□□ 0.56
UPF1-207ENST00000599848 TBPL2Q6SJ96 375 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 TMEM171Q8WVE6 324 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 PP6455Q8WZ26 134 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 POM121L2Q96KW2 1035 aa18.56■□□□□ 0.56
UPF1-207ENST00000599848 A0A0B4J203 849 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 SNRPBP14678 240 aaKnown RBP18.55■□□□□ 0.56
UPF1-207ENST00000599848 THBS4P35443 961 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 ROBO4Q8WZ75 1007 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 GALMQ96C23 342 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 CYTIPO60759 359 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 ALPLP05186 524 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 RAB7AP51149 207 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 UBE2IP63279 158 aaKnown RBP18.55■□□□□ 0.56
UPF1-207ENST00000599848 CEACAM16Q2WEN9 425 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 TMEM41BQ5BJD5 291 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 PXDC1Q5TGL8 231 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 ABI3BPQ7Z7G0 1075 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 TRBV5-4A0A0C4DH59 114 aa18.55■□□□□ 0.56
UPF1-207ENST00000599848 MGST1P10620 155 aaKnown RBP18.55■□□□□ 0.56
UPF1-207ENST00000599848 BMP5P22003 454 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms