RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TEX30Q5JUR7 227 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 SPATA46Q5T0L3 261 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 ACSM5Q6NUN0 579 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 LYPD4Q6UWN0 246 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 LINC00346Q8IVM7 164 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 ICA1LQ8NDH6 482 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 PROKR2Q8NFJ6 384 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 OR10S1Q8NGN2 331 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 UBASH3BQ8TF42 649 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 MAP6Q96JE9 813 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 HCAR1Q9BXC0 346 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 BPESC1Q9GZL8 116 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 GABARAPL1Q9H0R8 117 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 POFUT1Q9H488 388 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 MARCH7Q9H992 704 aa13.77□□□□□ -0.21
TRIM28-213ENST00000598355 HINT3Q9NQE9 182 aaKnown RBP13.77□□□□□ -0.21
TRIM28-213ENST00000598355 DDX28Q9NUL7 540 aaKnown RBP13.77□□□□□ -0.21
TRIM28-213ENST00000598355 H3BN98 237 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 RP2O75695 350 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 HPXP02790 462 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 TACSTD2P09758 323 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 CLUP10909 449 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 HOXB4P17483 251 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-213ENST00000598355 KITLGP21583 273 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 GCH1P30793 250 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 CENPAP49450 140 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 MOGQ16653 247 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 TMEM249Q2WGJ8 235 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 PCGF3Q3KNV8 242 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-213ENST00000598355 OR5K1Q8NHB7 308 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 SNX33Q8WV41 574 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 GTF3AQ92664 365 aaKnown RBP13.76□□□□□ -0.21
TRIM28-213ENST00000598355 COG8Q96MW5 612 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 ATF6BQ99941 703 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF556Q9HAH1 456 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 AP4S1Q9Y587 144 aa13.76□□□□□ -0.21
TRIM28-213ENST00000598355 SURF4O15260 269 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 CD5LO43866 347 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 GYPBP06028 91 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 ACSM4P0C7M7 580 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 USF1P22415 310 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-213ENST00000598355 MAGEB1P43366 347 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 DAPP51397 102 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 BLVRAP53004 296 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 ECH1Q13011 328 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 PSG7Q13046 419 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 ALKBH6Q3KRA9 238 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 FAM209AQ5JX71 171 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 FBXW12Q6X9E4 464 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 CCDC121Q6ZUS5 278 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 ATG16L2Q8NAA4 619 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF540Q8NDQ6 660 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 OR51L1Q8NGJ5 315 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 C1QTNF5Q9BXJ0 243 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 WDR76Q9H967 626 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 STARD10Q9Y365 291 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 GRIP1Q9Y3R0 1128 aa13.75□□□□□ -0.21
TRIM28-213ENST00000598355 IGHV4-61A0A0C4DH41 118 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 TVP23AA6NH52 213 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ZSCAN5BA6NJL1 495 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 FAM183AA6NL82 134 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 HLA-DQA2P01906 255 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 MT-ND5P03915 603 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 CD55P08174 381 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 FCGR1AP12314 374 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ACHEP22303 614 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 FASP25445 335 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 FMO3P31513 532 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 LIPAP38571 399 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 RPS27P42677 84 aaKnown RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ENTPD1P49961 510 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ACTR3P61158 418 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 GINS1Q14691 196 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 Q71RC1 249 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 HIPK1Q86Z02 1210 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 OR2AJ1Q8NGZ0 328 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ST7LQ8TDW4 575 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 RDH5Q92781 318 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 PTP4A1Q93096 173 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 YIPF5Q969M3 257 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 APOBEC3DQ96AK3 386 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 CHODLQ9H9P2 273 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 PAPOLBQ9NRJ5 636 aaKnown RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 CYSLTR2Q9NS75 346 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 PURGQ9UJV8 347 aaKnown RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 DYSFO75923 2080 aa13.74□□□□□ -0.21
TRIM28-213ENST00000598355 ANK3Q12955 4377 aaKnown RBP13.74□□□□□ -0.21
TRIM28-213ENST00000598355 A0A1B0GWJ7 208 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 PRODHO43272 600 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 TLX2O43763 284 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-213ENST00000598355 LILRA1O75019 489 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 CIB2O75838 187 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 GLCEO94923 617 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 IGHV1-46P01743 117 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 HMGN1P05114 100 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 RAC2P15153 192 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF823P16415 610 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 ZNF23P17027 643 aa13.73□□□□□ -0.21
TRIM28-213ENST00000598355 SLC2A5P22732 501 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms