RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OR6C65A6NJZ3 312 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 EN2P19622 333 aaPredicted RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 SLC25A1P53007 311 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 GALNTL5Q7Z4T8 443 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 DCXRQ7Z4W1 244 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ZNF679Q8IYX0 411 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 SFT2D1Q8WV19 159 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 OR8B4Q96RC9 309 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 EXOSC3Q9NQT5 275 aaKnown RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 MED29Q9NX70 200 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 SHISA8B8ZZ34 492 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 M0R036 132 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 FADS1O60427 444 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 SPP1P10451 314 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PTAFRP25105 342 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PRKXP51817 358 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PMPCAQ10713 525 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ATPAF1Q5TC12 328 aaPredicted RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 KCTD18Q6PI47 426 aaPredicted RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 C5orf46Q6UWT4 87 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 RTN4RL2Q86UN3 420 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 TMEM17Q86X19 198 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PAQR8Q8TEZ7 354 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 FGGYQ96C11 551 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 SHARPINQ9H0F6 387 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 SEC61A2Q9H9S3 476 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 TMED7Q9Y3B3 224 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ZNF432O94892 652 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 DEFB133Q30KQ1 61 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 MAMDC2Q7Z304 686 aaPredicted RBP13.71□□□□□ -0.21
UPF1-204ENST00000596842 TRAPPC6BQ86SZ2 158 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 ZNF615Q8N8J6 731 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 LDAHQ9H6V9 325 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 YBX2Q9Y2T7 364 aaKnown RBP13.71□□□□□ -0.21
UPF1-204ENST00000596842 PHF3Q92576 2039 aaKnown RBP13.71□□□□□ -0.21
UPF1-204ENST00000596842 IGHV5-51A0A0C4DH38 117 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 KIR2DS5A0A0G2JLQ3 304 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 A0A0G2JNG1 304 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 LOC107986453A0A1B0GWG9 222 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 PRSS37A4D1T9 235 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 KIR2DS3K7RE56 304 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 MYF5P13349 255 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 HOXA1P49639 335 aaPredicted RBP13.71□□□□□ -0.21
UPF1-204ENST00000596842 RAB2AP61019 212 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 UBE2IP63279 158 aaKnown RBP13.71□□□□□ -0.21
UPF1-204ENST00000596842 KIR2DS5Q14953 304 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 COX15Q7KZN9 410 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 ZNF440Q8IYI8 595 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 SLC43A2Q8N370 569 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 BPIFCQ8NFQ6 507 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 AKR7LQ8NHP1 331 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 ASB5Q8WWX0 329 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 WBP1Q96G27 269 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 RSRP1Q9BUV0 290 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 WDFY3Q8IZQ1 3526 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 VPS13AQ96RL7 3174 aa13.71□□□□□ -0.21
UPF1-204ENST00000596842 HMSDA8MTL9 139 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 RORAP35398 523 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 OR2B8PP59922 312 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 NAA40Q86UY6 237 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 INO80EQ8NBZ0 244 aaPredicted RBP13.71□□□□□ -0.22
UPF1-204ENST00000596842 ZNF248Q8NDW4 579 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 OR13C9Q8NGT0 318 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 MRPS24Q96EL2 167 aaKnown RBP13.71□□□□□ -0.22
UPF1-204ENST00000596842 RHOVQ96L33 236 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 MFRPQ9BY79 579 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 SELENOIQ9C0D9 397 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 DZANK1Q9NVP4 752 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 FAM186AA6NE01 2351 aa13.71□□□□□ -0.22
UPF1-204ENST00000596842 WDPCPO95876 746 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 PMP2P02689 132 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 GNB3P16520 340 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 PPT1P50897 306 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 EPHA4P54764 986 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 INSM1Q01101 510 aaPredicted RBP13.7□□□□□ -0.22
UPF1-204ENST00000596842 PAPD4Q6PIY7 484 aaKnown RBP13.7□□□□□ -0.22
UPF1-204ENST00000596842 CYYR1Q96J86 154 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 MEGF10Q96KG7 1140 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 GABRG3Q99928 467 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 MRPL22Q9NWU5 206 aaKnown RBP13.7□□□□□ -0.22
UPF1-204ENST00000596842 EPHA6Q9UF33 1036 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 TRAV14DV4A0A0A6YYC5 116 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 RFPL4AA6NLU0 287 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 RFPL4AL1F8VTS6 287 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 TNFRSF10CO14798 259 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 SIGLEC6O43699 453 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 GABRG2P18507 467 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 EGR3Q06889 387 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 PPP1R1AQ13522 171 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 MANEAQ5SRI9 462 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 AVPI1Q5T686 147 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 LRRC75AQ8NAA5 344 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 OR4D6Q8NGJ1 314 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 SUCNR1Q9BXA5 334 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 SLC19A3Q9BZV2 496 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 TRBV5-7A0A0A0MS05 114 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 A0A0B4J2A0 478 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 EPOPA6NHQ4 379 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 C5orf67F2Z3F1 127 aa13.7□□□□□ -0.22
UPF1-204ENST00000596842 WRBO00258 174 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms