RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 S100A14Q9HCY8 104 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 MYOZ1Q9NP98 299 aaPredicted RBP12.89□□□□□ -0.35
UPF1-202ENST00000594243 COMMD3-BMI1R4GMX3 469 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 AKAP6Q13023 2319 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 SAC3D1A6NKF1 404 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 MITFO75030 526 aaPredicted RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 SPARCP09486 303 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 CSF3P09919 207 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 LIPAP38571 399 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 ALDH3B1P43353 468 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 PPP2R2BQ00005 443 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 TNK1Q13470 666 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 PCK2Q16822 640 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 KLHL12Q53G59 568 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 SPATA46Q5T0L3 261 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 LYPD4Q6UWN0 246 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 RFPL4BQ6ZWI9 263 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 CXXC5Q7LFL8 322 aaKnown RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 SHFQ7M4L6 423 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 DCXRQ7Z4W1 244 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 ZCCHC24Q8N2G6 241 aaKnown RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 SNX33Q8WV41 574 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 SLC7A6Q92536 515 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 MAP6Q96JE9 813 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 INTS14Q96SY0 518 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 CIB1Q99828 191 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 HINT3Q9NQE9 182 aaKnown RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 DLL4Q9NR61 685 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 MYEF2Q9P2K5 600 aaKnown RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 TMEFF2Q9UIK5 374 aaPredicted RBP12.88□□□□□ -0.35
UPF1-202ENST00000594243 ZFHX3Q15911 3703 aa12.88□□□□□ -0.35
UPF1-202ENST00000594243 PRRC2AP48634 2157 aaKnown RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 TRIM64A6NGJ6 449 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 TRIM64BA6NI03 449 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 ZAR1LA6NP61 321 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 F5H5K5 113 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 DBHP09172 617 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 RPS27P42677 84 aaKnown RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 TPTEP56180 551 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 SLX4IPQ5VYV7 408 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 ZNF525Q8N782 197 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 FAM168AQ92567 244 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 STMN2Q93045 179 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 SPTSSAQ969W0 71 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 APOBEC3DQ96AK3 386 aaPredicted RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 MARCH7Q9H992 704 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 PNRC2Q9NPJ4 139 aaKnown RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 CYSLTR2Q9NS75 346 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 H2AFY2Q9P0M6 372 aaPredicted RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 CGGBP1Q9UFW8 167 aaPredicted RBP12.87□□□□□ -0.35
UPF1-202ENST00000594243 STARD10Q9Y365 291 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 ORC6Q9Y5N6 252 aa12.87□□□□□ -0.35
UPF1-202ENST00000594243 PLSCR5A0PG75 271 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 C17orf100A8MU93 164 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 H7C1Q1 480 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 NDUFS8O00217 210 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 INHBBP09529 407 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 NAT2P11245 290 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 MPV17P39210 176 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 PDLIM4P50479 330 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 RPS7P62081 194 aaKnown RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 GABPB1Q06547 395 aaPredicted RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 MAD2L1BPQ15013 274 aaPredicted RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 TAF13Q15543 124 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 ZSCAN26Q16670 478 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 RSPO1Q2MKA7 263 aaPredicted RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 ALKBH6Q3KRA9 238 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 KRTAP27-1Q3LI81 207 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 DPY19L4Q7Z388 723 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 ERI1Q8IV48 349 aaKnown RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 OR6N2Q8NGY6 317 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 SLAMF6Q96DU3 332 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 C9orf16Q9BUW7 83 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 TPK1Q9H3S4 243 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 DDX28Q9NUL7 540 aaKnown RBP12.86□□□□□ -0.35
UPF1-202ENST00000594243 USE1Q9NZ43 259 aa12.86□□□□□ -0.35
UPF1-202ENST00000594243 NF1P21359 2839 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 ITPR3Q14573 2671 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 LOC390937A0A1W2PQ73 354 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 TLX2O43763 284 aaPredicted RBP12.85□□□□□ -0.35
UPF1-202ENST00000594243 LY6HO94772 140 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 ACSM4P0C7M7 580 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 DAOP14920 347 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 SLC25A16P16260 332 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 SLC15A1P46059 708 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 ALDH3A2P51648 485 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 RAD23AP54725 363 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 EFNB1P98172 346 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 APOFQ13790 326 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 EIF2B1Q14232 305 aaKnown RBP12.85□□□□□ -0.35
UPF1-202ENST00000594243 PCGF3Q3KNV8 242 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 C12orf73Q69YU5 71 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 RHOUQ7L0Q8 258 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 TIGD4Q8IY51 512 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 PQLC1Q8N2U9 271 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 CIARTQ8N365 385 aaPredicted RBP12.85□□□□□ -0.35
UPF1-202ENST00000594243 OR10S1Q8NGN2 331 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 UBASH3BQ8TF42 649 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 HAVCR1Q96D42 359 aa12.85□□□□□ -0.35
UPF1-202ENST00000594243 CMBLQ96DG6 245 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms