RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 OR4C45A6NMZ5 311 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 E9PLN8 166 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 LOC110117498-PIK3R3F6TDL0 507 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 RGS9O75916 674 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ATE1O95260 518 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 PNPP00491 289 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 SERPINA3P01011 423 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 APOC1P02654 83 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 PATE4P0C8F1 98 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 HOXB1P14653 301 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 COX5AP20674 150 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 FGF9P31371 208 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ARR3P36575 388 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 KIR3DL2P43630 455 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 VBP1P61758 197 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 NCS1P62166 190 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 PSG4Q00888 419 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 MFGE8Q08431 387 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 NFATC3Q12968 1075 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 P2RY6Q15077 328 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ST3GAL2Q16842 350 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 SOWAHCQ53LP3 525 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 WDR38Q5JTN6 314 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF774Q6NX45 483 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM53Q6P2H8 277 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 GABRG1Q8N1C3 465 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 PRSS35Q8N3Z0 413 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF433Q8N7K0 673 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 OR1F12Q8NHA8 337 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 NANOS1Q8WY41 292 aaKnown RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 SPTSSAQ969W0 71 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 BOD1Q96IK1 185 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 PDCD1LG2Q9BQ51 273 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 VKORC1Q9BQB6 163 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 CENPOQ9BU64 300 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 HDHD5Q9BXW7 423 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 COMMD4Q9H0A8 199 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 WNT5BQ9H1J7 359 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 OPN3Q9H1Y3 402 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 TXNL4BQ9NX01 149 aaKnown RBP11.97□□□□□ -0.49
CCDC40-209ENST00000573474 GALNT8Q9NY28 637 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF224Q9NZL3 707 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 OR52A1Q9UKL2 312 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 GTF2A1LQ9UNN4 478 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 GSTK1Q9Y2Q3 226 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 TRGV8A0A0C4DH27 118 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 OR6C6A6NF89 314 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 GABRPO00591 440 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 SYNGR3O43761 229 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 DOK2O60496 412 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ZFPL1O95159 310 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 UBL3O95164 117 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 HLA-HP01893 362 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 CD79AP11912 226 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 UGT2B10P36537 528 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 PRKXP51817 358 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 PSMA6P60900 246 aaKnown RBP11.96□□□□□ -0.49
CCDC40-209ENST00000573474 SPCS2Q15005 226 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 TBRG1Q3YBR2 411 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 HIKESHIQ53FT3 197 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 YIF1BQ5BJH7 314 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 BCL2L15Q5TBC7 163 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 PAMR1Q6UXH9 720 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM91Q6ZNR0 172 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 USP43Q70EL4 1123 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ALDH16A1Q8IZ83 802 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF283Q8N7M2 679 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF676Q8N7Q3 588 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 C1orf162Q8NEQ5 155 aaPredicted RBP11.96□□□□□ -0.49
CCDC40-209ENST00000573474 IL17RDQ8NFM7 739 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 KBTBD8Q8NFY9 601 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 TRMT61AQ96FX7 289 aaKnown RBP11.96□□□□□ -0.49
CCDC40-209ENST00000573474 PIGMQ9H3S5 423 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 MOB1AQ9H8S9 216 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 G6PC2Q9NQR9 355 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 FAM206AQ9NX38 181 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF629Q9UEG4 869 aaPredicted RBP11.96□□□□□ -0.49
CCDC40-209ENST00000573474 ATPIF1Q9UII2 106 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 SH3BGRL2Q9UJC5 107 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 SLC22A13Q9Y226 551 aa11.96□□□□□ -0.49
CCDC40-209ENST00000573474 TPRP12270 2363 aaKnown RBP11.96□□□□□ -0.5
CCDC40-209ENST00000573474 FREM1Q5H8C1 2179 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 SPTA1P02549 2419 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 A0A0G2JNJ9 132 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 MSTNO14793 375 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 GATBO75879 557 aaKnown RBP11.95□□□□□ -0.5
CCDC40-209ENST00000573474 LYZL6O75951 148 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 CRYGSP22914 178 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 OTX1P32242 354 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-209ENST00000573474 CA7P43166 264 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 HTR5AP47898 357 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 CX3CR1P49238 355 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 TPTEP56180 551 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 RAB1AP62820 205 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 GALK2Q01415 458 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 GABRA6Q16445 453 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 RSPO1Q2MKA7 263 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-209ENST00000573474 KRTAP27-1Q3LI81 207 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 ACSM3Q53FZ2 586 aa11.95□□□□□ -0.5
CCDC40-209ENST00000573474 PABPC1L2AQ5JQF8 200 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms