RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 OR1F12Q8NHA8 337 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 AKR7LQ8NHP1 331 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 ZNRF4Q8WWF5 429 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 MS4A3Q96HJ5 214 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 POM121L2Q96KW2 1035 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 COG8Q96MW5 612 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 BCL2L14Q9BZR8 327 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 YIPF3Q9GZM5 350 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 ZNF442Q9H7R0 627 aa17.8■□□□□ 0.44
VPS53-210ENST00000571456 CISD1Q9NZ45 108 aaKnown RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 EIF3KQ9UBQ5 218 aaKnown RBP17.8■□□□□ 0.44
VPS53-210ENST00000571456 TVP23AA6NH52 213 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 ATP6V1G2-DDX39BF2Z307 99 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 SYNGR3O43761 229 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 GPANK1O95872 356 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 SPARCP09486 303 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 NR4A1P22736 598 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 APEX1P27695 318 aaKnown RBP17.79■□□□□ 0.44
VPS53-210ENST00000571456 HTR1FP30939 366 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 HTR5AP47898 357 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 HSPA13P48723 471 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 RGS6P49758 472 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 ZNF774Q6NX45 483 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 SLC16A9Q7RTY1 509 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 KBTBD8Q8NFY9 601 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 OR6N2Q8NGY6 317 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 AKAP1Q92667 903 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS53-210ENST00000571456 ZMYND19Q96E35 227 aaPredicted RBP17.79■□□□□ 0.44
VPS53-210ENST00000571456 DHRS9Q9BPW9 319 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 ADI1Q9BV57 179 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 WDR76Q9H967 626 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 ELOVL3Q9HB03 270 aa17.79■□□□□ 0.44
VPS53-210ENST00000571456 BEX4Q9NWD9 120 aaPredicted RBP17.79■□□□□ 0.44
VPS53-210ENST00000571456 PHYHO14832 338 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 RER1O15258 196 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 APOC1P02654 83 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 GLRXP35754 106 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 SLC15A1P46059 708 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 CCDC92Q53HC0 331 aaPredicted RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 MYPOPQ86VE0 399 aaPredicted RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 CIARTQ8N365 385 aaPredicted RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 BBS1Q8NFJ9 593 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 OTOSQ8NHW6 89 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 CNN2Q99439 309 aaKnown RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 ATF6BQ99941 703 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 RASSF4Q9H2L5 321 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 DDX28Q9NUL7 540 aaKnown RBP17.78■□□□□ 0.44
VPS53-210ENST00000571456 ATP23Q9Y6H3 246 aa17.78■□□□□ 0.44
VPS53-210ENST00000571456 DSCAMO60469 2012 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 CCDC182A6NF36 153 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 RNF212BA8MTL3 300 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 ZNF878C9JN71 531 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 H3BSA7 217 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 H7C1Q1 480 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 CALCRP30988 508 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 APOBEC3AP31941 199 aaPredicted RBP17.77■□□□□ 0.44
VPS53-210ENST00000571456 CAPGP40121 348 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 ADARB1P78563 741 aaKnown RBP17.77■□□□□ 0.44
VPS53-210ENST00000571456 DPY19L4Q7Z388 723 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 DCXRQ7Z4W1 244 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 LINC00346Q8IVM7 164 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 LILRB1Q8NHL6 650 aaPredicted RBP17.77■□□□□ 0.44
VPS53-210ENST00000571456 RHOXF1Q8NHV9 184 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 CYGBQ8WWM9 190 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 SPTSSAQ969W0 71 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 ZNF582Q96NG8 517 aaPredicted RBP17.77■□□□□ 0.44
VPS53-210ENST00000571456 MYCBPQ99417 103 aaPredicted RBP17.77■□□□□ 0.44
VPS53-210ENST00000571456 CA10Q9NS85 328 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 TBCCD1Q9NVR7 557 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 CLN6Q9NWW5 311 aa17.77■□□□□ 0.44
VPS53-210ENST00000571456 LOC100509620A0A075B734 347 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 A0A1W2PPR1 153 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 C5orf49A4QMS7 147 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 PLAUP00749 431 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 LYNP07948 512 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 BMP4P12644 408 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 GABRB1P18505 474 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 GRB2P62993 217 aaKnown RBP17.76■□□□□ 0.43
VPS53-210ENST00000571456 SPOCK1Q08629 439 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 SNTB2Q13425 540 aaKnown RBP17.76■□□□□ 0.43
VPS53-210ENST00000571456 ZNF691Q5VV52 312 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 AGAP6Q5VW22 663 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 KCTD18Q6PI47 426 aaPredicted RBP17.76■□□□□ 0.43
VPS53-210ENST00000571456 CORO6Q6QEF8 472 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 DEGS2Q6QHC5 323 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 ENTHD1Q8IYW4 607 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 FBXL14Q8N1E6 418 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 ST7LQ8TDW4 575 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 NRG4Q8WWG1 115 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 ASB17Q8WXJ9 295 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 PIGTQ969N2 578 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 MAP6Q96JE9 813 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 NIPAL2Q9H841 368 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 SP140LQ9H930 580 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 UBTD1Q9HAC8 227 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 PCDHGB1Q9Y5G3 927 aa17.76■□□□□ 0.43
VPS53-210ENST00000571456 M0R129 80 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 CD53P19397 219 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 TTKP33981 857 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms