RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 BGLAPP02818 100 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 HIST1H2ABP04908 130 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 LIPFP07098 398 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 HSD17B1P14061 328 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 HOXB6P17509 224 aaKnown RBP9.21□□□□□ -0.94
VPS53-207ENST00000570510 AQP1P29972 269 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 WNT5AP41221 380 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 DOC2BQ14184 412 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 MELKQ14680 651 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 CD276Q5ZPR3 534 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 CCBE1Q6UXH8 406 aaPredicted RBP9.21□□□□□ -0.94
VPS53-207ENST00000570510 HIST3H2AQ7L7L0 130 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 C1orf87Q8N0U7 546 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 PGAM4Q8N0Y7 254 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 OR6T1Q8NGN1 323 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 ADAMTS16Q8TE57 1224 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 HIST1H2ACQ93077 130 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 LHX4Q969G2 390 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 PHF21AQ96BD5 680 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 POM121L2Q96KW2 1035 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 MOGAT1Q96PD6 335 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 TECTBQ96PL2 329 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 SIGLEC11Q96RL6 698 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 OCSTAMPQ9BR26 566 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 GORASP2Q9H8Y8 452 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 FN3KRPQ9HA64 309 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 CMTM6Q9NX76 183 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 STX18Q9P2W9 335 aaKnown RBP9.21□□□□□ -0.94
VPS53-207ENST00000570510 TAGLN3Q9UI15 199 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 RPS6KA6Q9UK32 745 aa9.21□□□□□ -0.94
VPS53-207ENST00000570510 IGKV1D-42A0A075B6H8 117 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 IGHV1-69DA0A0B4J2H0 117 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 A0A0U1RQK1 487 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 ZNF879B4DU55 563 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 MCIDASD6RGH6 385 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 PHYHO14832 338 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 TPST2O60704 377 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 TSPAN9O75954 239 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CYB5R3P00387 301 aaPredicted RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 IGHV1-69P01742 117 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 IRF2P14316 349 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CFHR2P36980 270 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 GUCA1AP43080 201 aaPredicted RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 NUDT2P50583 147 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 MMP16P51512 607 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CRYBA2P53672 197 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CDH12P55289 794 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 LIPEQ05469 1076 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 ST3GAL3Q11203 375 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 PSG7Q13046 419 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 SGCAQ16586 387 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 NSUN5P1Q3KNT7 163 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CYBRD1Q53TN4 286 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 ENTPD8Q5MY95 495 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 SAMD4BQ5PRF9 694 aaKnown RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 TTC33Q6PID6 262 aaPredicted RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 C16orf89Q6UX73 402 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 RFPL4BQ6ZWI9 263 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 CBLL1Q75N03 491 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 HDDC2Q7Z4H3 204 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 RNF113BQ8IZP6 322 aaKnown RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 PNLDC1Q8NA58 520 aaKnown RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 SPERTQ8NA61 448 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 SMYD1Q8NB12 490 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 AKR7LQ8NHP1 331 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 MCHR2Q969V1 340 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 ITPKCQ96DU7 683 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 C4orf45Q96LM5 186 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 TMEM246Q9BRR3 403 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 MUC13Q9H3R2 512 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 TOR3AQ9H497 397 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 SIAEQ9HAT2 523 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 GCM1Q9NP62 436 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 ZNF229Q9UJW7 825 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 SAMD4AQ9UPU9 718 aaKnown RBP9.2□□□□□ -0.94
VPS53-207ENST00000570510 DOCK11Q5JSL3 2073 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 PLXNB1O43157 2135 aa9.2□□□□□ -0.94
VPS53-207ENST00000570510 LOC100509620A0A075B734 347 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 LRRN3E7EW58 273 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 ABHD16AO95870 558 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 MMP7P09237 267 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 NR2C1P13056 603 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 ZNF32P17041 273 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 SRP9P49458 86 aaKnown RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 SLC7A2P52569 658 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 PSME3P61289 254 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 ERVK-25P63136 954 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 EMX1Q04741 257 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 TMEM255AQ5JRV8 349 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 FOXB2Q5VYV0 432 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 WDR25Q64LD2 544 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 SLC35E4Q6ICL7 350 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 COMTD1Q86VU5 262 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 LDLRAD3Q86YD5 345 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 PDZD9Q8IXQ8 264 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 FAM156AQ8NDB6 213 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 ZNF420Q8TAQ5 688 aaPredicted RBP9.19□□□□□ -0.94
VPS53-207ENST00000570510 R3HDM4Q96D70 268 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 PRRC1Q96M27 445 aa9.19□□□□□ -0.94
VPS53-207ENST00000570510 WDFY2Q96P53 400 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms