RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 OR4F15Q8NGB8 312 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ABHD4Q8TB40 342 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 GCDHQ92947 438 aaPredicted RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 PTP4A1Q93096 173 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 DUS3LQ96G46 650 aaKnown RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 CIB1Q99828 191 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 TTTY10Q9BZA0 68 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ZNF556Q9HAH1 456 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 PLEK2Q9NYT0 353 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 TVP23BQ9NYZ1 205 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 AASSQ9UDR5 926 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 TMEFF2Q9UIK5 374 aaPredicted RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 GRIP1Q9Y3R0 1128 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 TIMM10BQ9Y5J6 103 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 N6AMT1Q9Y5N5 214 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ARRDC5A6NEK1 342 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SGCEO43556 437 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 PRKYO43930 277 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SELENOFO60613 162 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 BAG2O95816 211 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 CSF3P09919 207 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 CRABP1P29762 137 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 GRK5P34947 590 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 CRISP1P54107 249 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 TBC1D28Q2M2D7 210 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 RSPO1Q2MKA7 263 aaPredicted RBP11.87□□□□□ -0.51
CLN3-235ENST00000568497 C3orf36Q3SXR2 165 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 KLHL12Q53G59 568 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SPRNQ5BIV9 151 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 LINC01590Q5TEZ4 76 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SLC18B1Q6NT16 456 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 ZNF544Q6NX49 715 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SSX8Q7RTT4 187 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 CPOQ8IVL8 374 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 NUP37Q8NFH4 326 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 OR10S1Q8NGN2 331 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 OR1J1Q8NGS3 322 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 SLC25A40Q8TBP6 338 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 UBE2FQ969M7 185 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 MAP6Q96JE9 813 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 AMELYQ99218 206 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 DOK1Q99704 481 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 NMNAT2Q9BZQ4 307 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 RACGAP1Q9H0H5 632 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 PLK3Q9H4B4 646 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 RIBC2Q9H4K1 309 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 S100A14Q9HCY8 104 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 KRT84Q9NSB2 600 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 KLHDC2Q9Y2U9 406 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 CMAHPQ9Y471 501 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 FKBP7Q9Y680 259 aa11.87□□□□□ -0.51
CLN3-235ENST00000568497 RIIAD1A6NNX1 92 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 SURF4O15260 269 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 SYNGR3O43761 229 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 IDH3BO43837 385 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 AHCYL1O43865 530 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 MRPL3P09001 348 aaKnown RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 NR2C1P13056 603 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 ANXA8P13928 327 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 NAA10P41227 235 aaPredicted RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 UCP2P55851 309 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 CDK5Q00535 292 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 COX10Q12887 443 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 RPL13AP3Q6NVV1 102 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 SLC27A4Q6P1M0 643 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 DNM1P34Q6PK57 102 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 ERI1Q8IV48 349 aaKnown RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 OR1F12Q8NHA8 337 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 FNDC8Q8TC99 324 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 POP5Q969H6 163 aaKnown RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 MRPL24Q96A35 216 aaKnown RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 CENPNQ96H22 339 aaPredicted RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 PITX2Q99697 317 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 OR2J1Q9GZK6 312 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 PNRC2Q9NPJ4 139 aaKnown RBP11.86□□□□□ -0.51
CLN3-235ENST00000568497 CMC2Q9NRP2 79 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 TREM2Q9NZC2 230 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 TAAR3PQ9P1P4 343 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 KLHL21Q9UJP4 597 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 STARD10Q9Y365 291 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 COMMD3-BMI1R4GMX3 469 aa11.86□□□□□ -0.51
CLN3-235ENST00000568497 A0A1W2PPW3 197 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 F5H5K5 113 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 EI24O14681 340 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 VENTXO95231 258 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 APOL3O95236 402 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 SLC2A1P11166 492 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 ZNF3P17036 446 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 GLRXP35754 106 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 COMPP49747 757 aaPredicted RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 SNRPD2P62316 118 aaKnown RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 SCRN3Q0VDG4 424 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 AQP6Q13520 282 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 HLXQ14774 488 aaPredicted RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 PTGES3Q15185 160 aaKnown RBP11.85□□□□□ -0.51
CLN3-235ENST00000568497 SNAPC1Q16533 368 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 KCNMB1Q16558 191 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 NRN1LQ496H8 165 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 MIDNQ504T8 468 aa11.85□□□□□ -0.51
CLN3-235ENST00000568497 KDM4DQ6B0I6 523 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms