RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 OR6C70A6NIJ9 312 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 H0YC42 278 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 CHST10O43529 356 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 SOX15O60248 233 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 RDH16O75452 317 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 EEDO75530 441 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 CD3GP09693 182 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZNF43P17038 809 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 GPX4P36969 197 aaPredicted RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 ATP5OP48047 213 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 CDKN2DP55273 166 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 TAS2R31P59538 309 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 CCNA1P78396 465 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 MRPS22P82650 360 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 CDK5Q00535 292 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 BEX3Q00994 111 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 GBE1Q04446 702 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 TWF1Q12792 350 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZNF235Q14590 738 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZNF726P1Q15940 193 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 IMMTQ16891 758 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 SOHLH1Q5JUK2 328 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 RUFY3Q7L099 469 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 NBPF5PQ86XG9 351 aaPredicted RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZCCHC7Q8N3Z6 543 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZNF645Q8N7E2 425 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 EIF1ADQ8N9N8 165 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 BHLHE23Q8NDY6 225 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 OR5M1Q8NGP8 315 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 RHEBL1Q8TAI7 183 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 CXorf40AQ8TE69 158 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 ZNF75CPQ92670 426 aaPredicted RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 PTX4Q96A99 478 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 TUBGCP3Q96CW5 907 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 STACQ99469 402 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 SLC29A1Q99808 456 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 C1orf50Q9BV19 199 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 ANGPTL4Q9BY76 406 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 NCOR1P1Q9H4R4 102 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 DDX18Q9NVP1 670 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 COX16Q9P0S2 106 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 SIGLEC7Q9Y286 467 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 CSDC2Q9Y534 153 aaKnown RBP1.1□□□□□ -2.23
VPS35-207ENST00000568191 TRIP11Q15643 1979 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 NSD2O96028 1365 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 PIK3R4Q99570 1358 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.09□□□□□ -2.23
VPS35-207ENST00000568191 THADAQ6YHU6 1953 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 GLYATL1P3A0A0U1RQE8 302 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 TMEM120BA0PK00 339 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CTAGE15A4D2H0 777 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 H7C417 338 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 MANBAO00462 879 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 NVLO15381 856 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 NUPL2O15504 423 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 REM1O75628 298 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 SERPINA3P01011 423 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CST1P01037 141 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 SERPINA5P05154 406 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 ANP32AP39687 249 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 NSG1P42857 185 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 GZMMP51124 257 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CCNHP51946 323 aaPredicted RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 CRISP1P54107 249 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 UBE2NP61088 152 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 CUL2Q13617 745 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 RBMY1FQ15415 496 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 MPV17L2Q567V2 206 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 HSP90AB3PQ58FF7 597 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CTSL3PQ5NE16 218 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 STUMQ69YW2 141 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CENPPQ6IPU0 288 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 C16orf87Q6PH81 154 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 SMARCD3Q6STE5 483 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 ANGPTL8Q6UXH0 198 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 ZYG11AQ6WRX3 759 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 OTUD6AQ7L8S5 288 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 CTAGE6Q86UF2 777 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 TMEM256Q8N2U0 113 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 PRELID2Q8N945 189 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 GPR26Q8NDV2 337 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 TRPV1Q8NER1 839 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 B3GNT7Q8NFL0 401 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 OR56B2PQ8NGI1 322 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 KIFAP3Q92845 792 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 IFT74Q96LB3 600 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 GSDMAQ96QA5 445 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 RBBP8Q99708 897 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 ATP5SQ99766 215 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 GGTLC1Q9BX51 225 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 EXOSC4Q9NPD3 245 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 TMEM9BQ9NQ34 198 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 NMRK1Q9NWW6 199 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 MTFP1Q9UDX5 166 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 SUN2Q9UH99 717 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 TRMT112Q9UI30 125 aaKnown RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 CAB39Q9Y376 341 aaPredicted RBP1.09□□□□□ -2.23
VPS35-207ENST00000568191 ASB3Q9Y575 518 aa1.09□□□□□ -2.23
VPS35-207ENST00000568191 XKRY2A2RUG3 117 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 OR6C74A6NCV1 312 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms