RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 ANKRD19PQ9H560 264 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 GCM1Q9NP62 436 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 ASH2LQ9UBL3 628 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 ATPIF1Q9UII2 106 aa12.54□□□□□ -0.4
CLN3-228ENST00000567804 CEACAM18A8MTB9 384 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 J3QW42 95 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 TMPRSS2O15393 492 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 SLC16A7O60669 478 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 RAC2P15153 192 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 SDHAP31040 664 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 PSME3P61289 254 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 LSM6P62312 80 aaKnown RBP12.53□□□□□ -0.4
CLN3-228ENST00000567804 CCDC92Q53HC0 331 aaPredicted RBP12.53□□□□□ -0.4
CLN3-228ENST00000567804 PRR31Q5SQ13 230 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 SHISA2Q6UWI4 295 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 RRM2BQ7LG56 351 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 OR5AS1Q8N127 324 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 OR1F12Q8NHA8 337 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 FAM46AQ96IP4 442 aaKnown RBP12.53□□□□□ -0.4
CLN3-228ENST00000567804 HSH2DQ96JZ2 352 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 NDEL1Q9GZM8 345 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 SYT4Q9H2B2 425 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 NMNAT1Q9HAN9 279 aaPredicted RBP12.53□□□□□ -0.4
CLN3-228ENST00000567804 ABCD2Q9UBJ2 740 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 OR5V1Q9UGF6 321 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 TMEM5Q9Y2B1 443 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 LRCH1Q9Y2L9 728 aa12.53□□□□□ -0.4
CLN3-228ENST00000567804 COA3Q9Y2R0 106 aaPredicted RBP12.53□□□□□ -0.4
CLN3-228ENST00000567804 IFNL4K9M1U5 179 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 IMPA2O14732 288 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 KHDRBS3O75525 346 aaKnown RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 NDUFB2O95178 105 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 FAM107AO95990 144 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 SERPINA1P01009 418 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 DBHP09172 617 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 WNT2P09544 360 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 RGS6P49758 472 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 PAX8Q06710 450 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 BAMBIQ13145 260 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 HLXQ14774 488 aaPredicted RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 GPR139Q6DWJ6 353 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 FBXW12Q6X9E4 464 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 FKBP9P1Q75LS8 142 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 TSEN54Q7Z6J9 526 aaKnown RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 GLB1L2Q8IW92 636 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 ATG16L2Q8NAA4 619 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 ZNF420Q8TAQ5 688 aaPredicted RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 SLC7A13Q8TCU3 470 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 MEGF10Q96KG7 1140 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 GPX7Q96SL4 187 aaPredicted RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 RERGLQ9H628 205 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 ZNF696Q9H7X3 374 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 NRIP3Q9NQ35 241 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 PTTG3PQ9NZH4 202 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 VSX1Q9NZR4 365 aaPredicted RBP12.52□□□□□ -0.41
CLN3-228ENST00000567804 SIGLEC7Q9Y286 467 aa12.52□□□□□ -0.41
CLN3-228ENST00000567804 GSTA4O15217 222 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 RER1O15258 196 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 PTP4A3O75365 173 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 DCTN3O75935 186 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 RNASE1P07998 156 aaKnown RBP12.51□□□□□ -0.41
CLN3-228ENST00000567804 RPS2P15880 293 aaKnown RBP12.51□□□□□ -0.41
CLN3-228ENST00000567804 NCK1P16333 377 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 CD80P33681 288 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 PAX2Q02962 417 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 KCNMB1Q16558 191 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 OR2T2Q6IF00 324 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 SLC27A4Q6P1M0 643 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 PTCHD4Q6ZW05 846 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 ADCK1Q86TW2 530 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 CYP4Z1Q86W10 505 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 PARP8Q8N3A8 854 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 FITM2Q8N6M3 262 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 OR8G5Q8NG78 346 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 OR10AD1Q8NGE0 317 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 OR5L1Q8NGL2 311 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 OR13G1Q8NGZ3 307 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 SSBP3Q9BWW4 388 aaPredicted RBP12.51□□□□□ -0.41
CLN3-228ENST00000567804 MS4A7Q9GZW8 240 aaPredicted RBP12.51□□□□□ -0.41
CLN3-228ENST00000567804 NUAK2Q9H093 628 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 TMEM165Q9HC07 324 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 IL20RAQ9UHF4 553 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 TAGLN3Q9UI15 199 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 ENPP4Q9Y6X5 453 aa12.51□□□□□ -0.41
CLN3-228ENST00000567804 SOCS2O14508 198 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 MLNRO43193 412 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 KCNAB3O43448 404 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 ZNF205O95201 554 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 CYB5R3P00387 301 aaPredicted RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 PPIAL4GP0DN37 164 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 IGHV4-38-2P0DP08 117 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 CPT2P23786 658 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 SRP9P49458 86 aaKnown RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 FXYD6P3P58550 94 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 HIST1H3AP68431 136 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 HIST2H3PS2Q5TEC6 136 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 C9orf139Q6ZV77 190 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 HIST2H3AQ71DI3 136 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 KLBQ86Z14 1044 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 RNF148Q8N7C7 305 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms