RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SPATC1Q76KD6 591 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 CXXC5Q7LFL8 322 aaKnown RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 PRSS45Q7RTY3 260 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 DPY19L4Q7Z388 723 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 DCXRQ7Z4W1 244 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 FBXL14Q8N1E6 418 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ZNF525Q8N782 197 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 TCEANCQ8N8B7 351 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 MAPK1IP1LQ8NDC0 245 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 IL17RDQ8NFM7 739 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 OR1J1Q8NGS3 322 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 OR6K6Q8NGW6 343 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 OR2T4Q8NH00 348 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 IPCEF1Q8WWN9 437 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 C4orf45Q96LM5 186 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 Q96MF0 132 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 RAB3IPQ96QF0 476 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 IL4I1Q96RQ9 567 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 SOX7Q9BT81 388 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 TPK1Q9H3S4 243 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 RIBC2Q9H4K1 309 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 GSX1Q9H4S2 264 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 CDH20Q9HBT6 801 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 PLEK2Q9NYT0 353 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 KIF17Q9P2E2 1029 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ABCA1O95477 2261 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 TLN2Q9Y4G6 2542 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 IGHV4-30-2A0A087WSY4 118 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 RIIAD1A6NNX1 92 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 B9A039 149 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 TLX2O43763 284 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 HLA-DQA2P01906 255 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 HPXP02790 462 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 LCKP06239 509 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 MRPL3P09001 348 aaKnown RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 SPARCP09486 303 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 SLC2A1P11166 492 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ANPEPP15144 967 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ZNF3P17036 446 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 OTX1P32242 354 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 NAA10P41227 235 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 MAGEB1P43366 347 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ENTPD1P49961 510 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 GDI2P50395 445 aaKnown RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 MMP15P51511 669 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ALDH3A2P51648 485 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 PCBD1P61457 104 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ELF3P78545 371 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 PLP2Q04941 152 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 PSG7Q13046 419 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 TNK1Q13470 666 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 APOFQ13790 326 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 SNAPC1Q16533 368 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 KLHL12Q53G59 568 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 TEX30Q5JUR7 227 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 RGS7BPQ6MZT1 257 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 DNM1P34Q6PK57 102 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 SSX6Q7RTT6 188 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ERI1Q8IV48 349 aaKnown RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 DEPDC4Q8N2C3 294 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 GJC3Q8NFK1 279 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ABHD4Q8TB40 342 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 KLF14Q8TD94 323 aaPredicted RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 NRG4Q8WWG1 115 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 YIPF5Q969M3 257 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 OTULINQ96BN8 352 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 COQ7Q99807 217 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 KCNS3Q9BQ31 491 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ABHD6Q9BV23 337 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 KCNN2Q9H2S1 579 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 TOR3AQ9H497 397 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 PPP1R3EQ9H7J1 279 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 ZNF556Q9HAH1 456 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 MOV10Q9HCE1 1003 aaKnown RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 DDX28Q9NUL7 540 aaKnown RBP7.87□□□□□ -1.15
VPS35-206ENST00000565228 DCAF16Q9NXF7 216 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 FBXL3Q9UKT7 428 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 GRIP1Q9Y3R0 1128 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 CMAHPQ9Y471 501 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 CACNG2Q9Y698 323 aa7.87□□□□□ -1.15
VPS35-206ENST00000565228 TANC2Q9HCD6 1990 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 CUBNO60494 3623 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 ZSCAN5BA6NJL1 495 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PRR23D1E9PI22 279 aaPredicted RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 F5H5K5 113 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 SSX4O60224 188 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 APOL3O95236 402 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 BAG2O95816 211 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 IFNGP01579 166 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 HMGN1P05114 100 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PRR23D2P0DMB1 279 aaPredicted RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 COL8A2P25067 703 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PEX2P28328 305 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 FMO3P31513 532 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 ARHGDIAP52565 204 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PPP1CBP62140 327 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 HOXA4Q00056 320 aaPredicted RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 RCN1Q15293 331 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 MBNL2Q5VZF2 373 aaKnown RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 SHFQ7M4L6 423 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms