RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CDK5R1Q15078 307 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 TSTQ16762 297 aaKnown RBP11.2□□□□□ -0.62
CLK3-214ENST00000564096 CCDC92Q53HC0 331 aaPredicted RBP11.2□□□□□ -0.62
CLK3-214ENST00000564096 PABPC1L2AQ5JQF8 200 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 TIMM23BQ5SRD1 257 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 STAC2Q6ZMT1 411 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 ZNF283Q8N7M2 679 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 ZNF485Q8NCK3 441 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 OR10S1Q8NGN2 331 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 CA5BP1Q8WTZ4 195 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 SMIM19Q96E16 107 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 DOK1Q99704 481 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 KCNJ15Q99712 375 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 ACTR6Q9GZN1 396 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 COMMD4Q9H0A8 199 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 PNRC2Q9NPJ4 139 aaKnown RBP11.2□□□□□ -0.62
CLK3-214ENST00000564096 NDUFB11Q9NX14 153 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 ZNF224Q9NZL3 707 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 GTF2A1LQ9UNN4 478 aa11.2□□□□□ -0.62
CLK3-214ENST00000564096 SMIM31A0A1B0GVY4 71 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 TMEM269A0A1B0GVZ9 245 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 FAM90A27PA6NNH2 459 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 C16orf97H3BN30 126 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 M0R135 149 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 SYNGR3O43761 229 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 PRB1P04280 392 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 PPP3CBP16298 524 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 CPEP16870 476 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 APLNRP35414 380 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 RGS6P49758 472 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 TPTEP56180 551 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 RAB1AP62820 205 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 ADORA2A-AS1P86434 159 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 PSG4Q00888 419 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 TRAM1Q15629 374 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 BCL2L15Q5TBC7 163 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 LIPKQ5VXJ0 399 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 ZNF774Q6NX45 483 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 ARL9Q6T311 187 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 MDP1Q86V88 176 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 SATL1Q86VE3 508 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 AKR7LQ8NHP1 331 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 MUCL1Q96DR8 90 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 ZNF799Q96GE5 643 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 DCLRE1CQ96SD1 692 aaKnown RBP11.19□□□□□ -0.62
CLK3-214ENST00000564096 WNT5BQ9H1J7 359 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 NDUFA13Q9P0J0 144 aa11.19□□□□□ -0.62
CLK3-214ENST00000564096 MED12LQ86YW9 2145 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 PHF3Q92576 2039 aaKnown RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 TRBV2A0A0J9YWF9 115 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 PNMA8CA0A1B0GUJ8 204 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 ACOD1A6NK06 481 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 TMEM212A6NML5 194 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 F5H5K5 113 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 MAGEB4O15481 346 aaPredicted RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 GPRIN2O60269 458 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 CD1AP06126 327 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 ANXA2P07355 339 aaKnown RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 PATE4P0C8F1 98 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 UBCP0CG48 685 aaKnown RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 CD36P16671 472 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 CELP19835 753 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 AGAP20933 346 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 GABRA5P31644 462 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 UGT2B10P36537 528 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 PSMB10P40306 273 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 GDI2P50395 445 aaKnown RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 MMP16P51512 607 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 CCR9P51686 369 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 TUBA1BP68363 451 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 GALK2Q01415 458 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 TPBGQ13641 420 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 ALKBH1Q13686 389 aaKnown RBP11.18□□□□□ -0.62
CLK3-214ENST00000564096 TSC22D1Q15714 1073 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 IGFBP7Q16270 282 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 TBC1D28Q2M2D7 210 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 FBXL19-AS1Q494R0 122 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 FDX2Q6P4F2 183 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 DRAM2Q6UX65 266 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 TUBA1AQ71U36 451 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 PHC2Q8IXK0 858 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 OR1J2Q8NGS2 313 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 THRSPQ92748 146 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 S100PBPQ96BU1 408 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 C4orf45Q96LM5 186 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 GRIP1Q9Y3R0 1128 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 GTF3C1Q12789 2109 aa11.18□□□□□ -0.62
CLK3-214ENST00000564096 CCDC160A6NGH7 325 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 PLPP2O43688 288 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 C1QL1O75973 258 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 LALBAP00709 142 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 SERPINA3P01011 423 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 CBR1P16152 277 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 CRYGSP22914 178 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 STOMP27105 288 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 OTX1P32242 354 aaPredicted RBP11.17□□□□□ -0.62
CLK3-214ENST00000564096 LIPAP38571 399 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 IDH3GP51553 393 aaPredicted RBP11.17□□□□□ -0.62
CLK3-214ENST00000564096 PRKXP51817 358 aa11.17□□□□□ -0.62
CLK3-214ENST00000564096 ZNF121P58317 390 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms