RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 BBIP1A8MTZ0 92 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 IQCF6A8MYZ5 107 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 SRRM5B3KS81 715 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 H7C1C5 153 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 NDUFA7O95182 113 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 IFNA8P32881 189 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 PSMB10P40306 273 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 SRP9P49458 86 aaKnown RBP13.7□□□□□ -0.22
CLN3-208ENST00000561505 LCN6P62502 163 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 ZBED5Q49AG3 693 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 MBOAT2Q6ZWT7 520 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 TMEM86BQ8N661 226 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 CELF2-AS1Q8N7Q2 184 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 OR5L1Q8NGL2 311 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 OR13C2Q8NGS9 318 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 Q8TCH9 128 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 DYDC1Q8WWB3 177 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 WFDC12Q8WWY7 111 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 PLEKHA8Q96JA3 519 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 CITED1Q99966 193 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 ANKRD19PQ9H560 264 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 NMNAT1Q9HAN9 279 aaPredicted RBP13.7□□□□□ -0.22
CLN3-208ENST00000561505 NOX4Q9NPH5 578 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 NRIP3Q9NQ35 241 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 GRHPRQ9UBQ7 328 aa13.7□□□□□ -0.22
CLN3-208ENST00000561505 DOCK11Q5JSL3 2073 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 TRAV40A0A0B4J280 105 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 H0YL77 283 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 PHYHO14832 338 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 HOXA3O43365 443 aaPredicted RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 TXNDC12O95881 172 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 RPS2P15880 293 aaKnown RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 RPL15P61313 204 aaKnown RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 GNB2P62879 340 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 RELBQ01201 579 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 HLXQ14774 488 aaPredicted RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 DEFB112Q30KQ8 113 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 OR2T2Q6IF00 324 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 Q6YL49 198 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 RHOUQ7L0Q8 258 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 TSEN54Q7Z6J9 526 aaKnown RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 GLB1L2Q8IW92 636 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 MICU2Q8IYU8 434 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 ZNF420Q8TAQ5 688 aaPredicted RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 ERGIC1Q969X5 290 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 APOBEC3DQ96AK3 386 aaPredicted RBP13.69□□□□□ -0.22
CLN3-208ENST00000561505 ASH2LQ9UBL3 628 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 SIGLEC7Q9Y286 467 aa13.69□□□□□ -0.22
CLN3-208ENST00000561505 A0A0G2JK05 382 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 ELOVL7A1L3X0 281 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 FAM181BA6NEQ2 426 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 J3KTA2 159 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 MRASO14807 208 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 TNFRSF13BO14836 293 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 KHDRBS3O75525 346 aaKnown RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 PTBP3O95758 552 aaKnown RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 GPANK1O95872 356 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 CYB5R3P00387 301 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 DBHP09172 617 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 SDHAP31040 664 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 RAD23AP54725 363 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 KLF10Q13118 480 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 LRRC23Q53EV4 343 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 WDR25Q64LD2 544 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 GPR139Q6DWJ6 353 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 DCDC5Q6ZRR9 648 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 JAZF1Q86VZ6 243 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 ATG16L2Q8NAA4 619 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 OR2T12Q8NG77 320 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 OR10AD1Q8NGE0 317 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 OR10S1Q8NGN2 331 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 LZICQ8WZA0 190 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 ZNF582Q96NG8 517 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 COQ7Q99807 217 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 NUDT16L1Q9BRJ7 211 aaKnown RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 FNDC11Q9BVV2 318 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 C1RLQ9NZP8 487 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 PDP1Q9P0J1 537 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 RHCGQ9UBD6 479 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 COA3Q9Y2R0 106 aaPredicted RBP13.68□□□□□ -0.22
CLN3-208ENST00000561505 WNK1Q9H4A3 2382 aa13.68□□□□□ -0.22
CLN3-208ENST00000561505 IGHV3OR16-10A0A075B7F0 116 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 A0A0G2JND7 137 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 MDFIC2A0A1B0GVS7 189 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 XKRYO14609 159 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 RER1O15258 196 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 IFNW1P05000 195 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 MMP9P14780 707 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 PITPNBP48739 271 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 FXYD6P3P58550 94 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 MAB21L1Q13394 359 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 MIDNQ504T8 468 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 TBPL2Q6SJ96 375 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 SPATC1Q76KD6 591 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 VTCN1Q7Z7D3 282 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 ADCK1Q86TW2 530 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 C1orf87Q8N0U7 546 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 OR5AS1Q8N127 324 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 OR8B3Q8NGG8 313 aa13.67□□□□□ -0.22
CLN3-208ENST00000561505 OR4F5Q8NH21 305 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms