RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 WACQ9BTA9 647 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 NRIP3Q9NQ35 241 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 DDX28Q9NUL7 540 aaKnown RBP9.78□□□□□ -0.84
USP3-220ENST00000561381 PTTG3PQ9NZH4 202 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 PPP1R3CQ9UQK1 317 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 AP3M1Q9Y2T2 418 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 INSIG2Q9Y5U4 225 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 IER3IP1Q9Y5U9 82 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 AUP1Q9Y679 476 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 ENPP4Q9Y6X5 453 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 TRBV4-1A0A0J9YWV2 114 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 F5H0A9 414 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 H0YL77 283 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 TMEM178BH3BS89 294 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 SOCS2O14508 198 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 SLC22A2O15244 555 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 AHCYL1O43865 530 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 KHDRBS3O75525 346 aaKnown RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 DIRAS1O95057 198 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 NDUFB2O95178 105 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 ZNF12P17014 697 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 TNFRSF1AP19438 455 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 SDHAP31040 664 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 CDKN2AP42771 156 aaKnown RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 OMPP47874 163 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 RELBQ01201 579 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 SEC23BQ15437 767 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 MEP1BQ16820 701 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 ARMCX4Q5H9R4 360 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 OR2T2Q6IF00 324 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 GLB1L2Q8IW92 636 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 ATG16L2Q8NAA4 619 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 OR10AD1Q8NGE0 317 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 ZNF420Q8TAQ5 688 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 PTP4A1Q93096 173 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 POP5Q969H6 163 aaKnown RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 FAM162AQ96A26 154 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 ZMYND19Q96E35 227 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 C1orf147Q96MC9 270 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 ZNF48Q96MX3 618 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 TSSK2Q96PF2 358 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 GPA33Q99795 319 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 NUAK2Q9H093 628 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 NTN4Q9HB63 628 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 GCM1Q9NP62 436 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 VSX1Q9NZR4 365 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 NDUFAF4Q9P032 175 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 IL19Q9UHD0 177 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 NUP50Q9UKX7 468 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 TMEM5Q9Y2B1 443 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 POLR3KQ9Y2Y1 108 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 PCDHGB1Q9Y5G3 927 aa9.77□□□□□ -0.85
USP3-220ENST00000561381 SOX21Q9Y651 276 aaPredicted RBP9.77□□□□□ -0.85
USP3-220ENST00000561381 IGHV3OR16-10A0A075B7F0 116 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 A0A1W2PRQ8 180 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 DNAJC9-AS1A6NH13 148 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 CEACAM18A8MTB9 384 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 DCTN6O00399 190 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 CYB5R3P00387 301 aaPredicted RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 H1F0P07305 194 aaKnown RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 RAC2P15153 192 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 TUBG1P23258 451 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 MDH2P40926 338 aaKnown RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 LSM6P62312 80 aaKnown RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 DGCR6Q14129 220 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 FGD3Q5JSP0 725 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 FAM201AQ5SY85 155 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 GPR139Q6DWJ6 353 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 CORO6Q6QEF8 472 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 DOK3Q7L591 496 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 JAZF1Q86VZ6 243 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 CYP4Z1Q86W10 505 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 FAM86B1Q8N7N1 296 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 OR52J3Q8NH60 311 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 SGMS2Q8NHU3 365 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 TAF15Q92804 592 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP3-220ENST00000561381 RSRC1Q96IZ7 334 aaKnown RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 MEGF10Q96KG7 1140 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 GPX7Q96SL4 187 aaPredicted RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 HOPXQ9BPY8 73 aaPredicted RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 KCTD14Q9BQ13 255 aaPredicted RBP9.76□□□□□ -0.85
USP3-220ENST00000561381 ANKRD19PQ9H560 264 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 WDR76Q9H967 626 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 TUBG2Q9NRH3 451 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 ZNF446Q9NWS9 450 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 POLR1DQ9Y2S0 133 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 LHFPL6Q9Y693 200 aa9.76□□□□□ -0.85
USP3-220ENST00000561381 A8MXK9 166 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 SURF4O15260 269 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 MLNRO43193 412 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 PPP1R3DO95685 299 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 WNT2P09544 360 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 HKR1P10072 659 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 SELEP16581 610 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 PRTN3P24158 256 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 CD80P33681 288 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 CENPAP49450 140 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 NUDT2P50583 147 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 PAX8Q06710 450 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 KCNMB1Q16558 191 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms