RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 VHLLQ6RSH7 139 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 SLC35F2Q8IXU6 374 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 RNF133Q8WVZ7 376 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 RFKQ969G6 155 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 FBXW5Q969U6 566 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 LURAP1Q96LR2 239 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 TTTY10Q9BZA0 68 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 YIPF3Q9GZM5 350 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 POLQO75417 2590 aa18.77■□□□□ 0.59
SNX1-210ENST00000560260 ICMTO60725 284 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 NGFP01138 241 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 PCSK6P29122 969 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 TMED1Q13445 227 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 ZNF611Q8N823 705 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 ZNF454Q8N9F8 522 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 TMEM171Q8WVE6 324 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 RNFT2Q96EX2 444 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 DHRS9Q9BPW9 319 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 AMBNQ9NP70 447 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 CENPMQ9NSP4 180 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 CLN6Q9NWW5 311 aa18.76■□□□□ 0.59
SNX1-210ENST00000560260 ZNF878C9JN71 531 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 LYNP07948 512 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 SOD3P08294 240 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 ACSM4P0C7M7 580 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 DANCRP0C864 163 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 DBTP11182 482 aaKnown RBP18.75■□□□□ 0.59
SNX1-210ENST00000560260 OTX1P32242 354 aaPredicted RBP18.75■□□□□ 0.59
SNX1-210ENST00000560260 OPRL1P41146 370 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 MTNR1AP48039 350 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 GALK2Q01415 458 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 ADIPOQQ15848 244 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 PAMR1Q6UXH9 720 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 SSX6Q7RTT6 188 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 SETD9Q8NE22 299 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 FBLIM1Q8WUP2 373 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 THEM6Q8WUY1 208 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 IGFBPL1Q8WX77 278 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 C4orf45Q96LM5 186 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 POFUT1Q9H488 388 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 ZNF442Q9H7R0 627 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.75■□□□□ 0.59
SNX1-210ENST00000560260 GRIP1Q9Y3R0 1128 aa18.75■□□□□ 0.59
SNX1-210ENST00000560260 C5orf63A6NC05 138 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 F5H5K5 113 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 ABHD16AO95870 558 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 FABP6P51161 128 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 UCP2P55851 309 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 ECH1Q13011 328 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 NAA40Q86UY6 237 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 C8orf59Q8N0T1 100 aaPredicted RBP18.74■□□□□ 0.59
SNX1-210ENST00000560260 LGALS12Q96DT0 336 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 TBX5Q99593 518 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 COPS4Q9BT78 406 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 LAMP5Q9UJQ1 280 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 HSPE1-MOB4S4R3N1 261 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 PDZD2O15018 2839 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 J3QRE1 110 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 CD8AP01732 235 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 GLRXP35754 106 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 POU4F2Q12837 409 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 TMEM255AQ5JRV8 349 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 SPATA46Q5T0L3 261 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 ZNF544Q6NX49 715 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 LRRN1Q6UXK5 716 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 ABHD4Q8TB40 342 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 Q96MT0 163 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 DCLRE1CQ96SD1 692 aaKnown RBP18.74■□□□□ 0.59
SNX1-210ENST00000560260 RHNO1Q9BSD3 238 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 SLCO1C1Q9NYB5 712 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 FZR1Q9UM11 496 aa18.74■□□□□ 0.59
SNX1-210ENST00000560260 SPG11Q96JI7 2443 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 M0R135 149 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 PSMD9O00233 223 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 MAGEB4O15481 346 aaPredicted RBP18.73■□□□□ 0.59
SNX1-210ENST00000560260 TTKP33981 857 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 PRKXP51817 358 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 CDK5R2Q13319 367 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 C20orf204Q6ZNR8 217 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 COLCA1Q6ZS62 124 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 DTX2Q86UW9 622 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 LRP11Q86VZ4 500 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 OR1J1Q8NGS3 322 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 ZNF799Q96GE5 643 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 KCNJ15Q99712 375 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 TRAF4Q9BUZ4 470 aaPredicted RBP18.73■□□□□ 0.59
SNX1-210ENST00000560260 EXOGQ9Y2C4 368 aaKnown RBP18.73■□□□□ 0.59
SNX1-210ENST00000560260 PLEKHA6Q9Y2H5 1048 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 SPEF1Q9Y4P9 236 aa18.73■□□□□ 0.59
SNX1-210ENST00000560260 CSMD1Q96PZ7 3565 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 A0A1W2PQL4 384 aaPredicted RBP18.72■□□□□ 0.59
SNX1-210ENST00000560260 ATE1O95260 518 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 LCKP06239 509 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 ADRA2AP08913 450 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 OR4A8P0C604 315 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 CD53P19397 219 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 APOBEC3AP31941 199 aaPredicted RBP18.72■□□□□ 0.59
SNX1-210ENST00000560260 CXCR4P61073 352 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 PPP1CBP62140 327 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 ZNF85Q03923 595 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms