RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RFX4Q33E94 735 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 KLHL12Q53G59 568 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 HSD17B12Q53GQ0 312 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PABPC1L2AQ5JQF8 200 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TPRG1LQ5T0D9 272 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 HES5Q5TA89 166 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 N4BP2L1Q5TBK1 243 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MLIPQ5VWP3 458 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ANKRD22Q5VYY1 191 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NXNL2Q5VZ03 156 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 LAMTOR1Q6IAA8 161 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 FAM71E1Q6IPT2 247 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TEX261Q6UWH6 196 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ZYG11AQ6WRX3 759 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 UTS2BQ765I0 119 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TAF8Q7Z7C8 310 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PHF13Q86YI8 300 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SNX29P2Q8IUI4 249 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 C10orf107Q8IVU9 208 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SERPINA12Q8IW75 414 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RIMKLAQ8IXN7 391 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SVOPLQ8N434 492 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 GDPD1Q8N9F7 314 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF565Q8N9K5 539 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 FAM83FQ8NEG4 500 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 DUSP18Q8NEJ0 188 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF555Q8NEP9 628 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NDNFQ8TB73 568 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CYGBQ8WWM9 190 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RORBQ92753 470 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RBPMSQ93062 196 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PSMG2Q969U7 264 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 KIAA1143Q96AT1 154 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RAD51AP1Q96B01 352 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RAB39BQ96DA2 213 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 QKIQ96PU8 341 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 OR52B2Q96RD2 323 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 C12orf57Q99622 126 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 EBNA1BP2Q99848 306 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 PLA2G2FQ9BZM2 168 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 IL22Q9GZX6 179 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 SLC22A4Q9H015 551 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RACGAP1Q9H0H5 632 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ATG10Q9H0Y0 220 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ING2Q9H160 280 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 RANBP3Q9H6Z4 567 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TRIM45Q9H8W5 580 aaPredicted RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CAB39LQ9H9S4 337 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CYP3A43Q9HB55 503 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 POPDC2Q9HBU9 364 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 MCCC2Q9HCC0 563 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 BIN3Q9NQY0 253 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 POLE4Q9NR33 117 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NANSQ9NR45 359 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 LYARQ9NX58 379 aaKnown RBP2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ADA2Q9NZK5 511 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TBC1D24Q9ULP9 559 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 COPS3Q9UNS2 423 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 ERVW-1Q9UQF0 538 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 TPRKBQ9Y3C4 175 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 U3KQ87 197 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 CAMTA1Q9Y6Y1 1673 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 AKAP11Q9UKA4 1901 aa2.25□□□□□ -2.05
VPS13C-208ENST00000559119 NHSL1Q5SYE7 1610 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NRXN3Q9Y4C0 1643 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 DOCK2Q92608 1830 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RGPD8O14715 1765 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RGPD5Q99666 1765 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 A0A1B0GTQ1 180 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CCDC182A6NF36 153 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 EFCAB9A8MZ26 197 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C2orf74A8MZ97 194 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 LINC00587B1AMM8 73 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 GOLGA8SH3BPF8 625 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 APOC4-APOC2K7ER74 178 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SGK1O00141 431 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 UPK1AO00322 258 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 BTN3A3O00478 584 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 KPNA3O00505 521 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MRASO14807 208 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RGS5O15539 181 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SLC37A4O43826 429 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 EIF1BO60739 113 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 VPS26AO75436 327 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 BANF1O75531 89 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ZMPSTE24O75844 475 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SCO1O75880 301 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NPPAP01160 153 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HLA-DQB1P01920 261 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 APOC2P02655 101 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 S100A8P05109 93 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 IL6P05231 212 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HBQ1P09105 142 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SMIM6P0DI80 62 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NCF1P14598 390 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HPGDP15428 266 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HOXB8P17481 243 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SPI1P17947 270 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 IL1RNP18510 177 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RCC1P18754 421 aaPredicted RBP2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms