RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SEMG2Q02383 582 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ZNF33AQ06730 810 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SLC39A6Q13433 755 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 DGCR6Q14129 220 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PRPSAP1Q14558 356 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 WDR43Q15061 677 aaKnown RBP eCLIP1.06□□□□□ -2.24
USP3-209ENST00000558925 PON2Q15165 354 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PGGHGQ32M88 737 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 GCSAMLQ5JQS6 135 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TPTE2P1Q5T6R2 138 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 UBE2UQ5VVX9 321 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 METTL21CQ5VZV1 264 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 STUMQ69YW2 141 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ARL9Q6T311 187 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TMEM205Q6UW68 189 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ANGPTL8Q6UXH0 198 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ASCL4Q6XD76 172 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 LINC00336Q6ZUF6 198 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MRPL21Q7Z2W9 205 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 VTCN1Q7Z7D3 282 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MRPL55Q7Z7F7 128 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 LINC00523Q86TU6 105 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 APRG1Q8IVJ8 170 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 C12orf56Q8IXR9 622 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MKXQ8IYA7 352 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 FAM71AQ8IYT1 594 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PDCL2Q8N4E4 241 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 KIF2BQ8N4N8 673 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 NPWQ8N729 165 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SNX31Q8N9S9 440 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 C11orf72Q8NBR9 251 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 INO80EQ8NBZ0 244 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 OR52K1Q8NGK4 314 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 OR6X1Q8NH79 312 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 BLOC1S5Q8TDH9 187 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TCP10LQ8TDR4 215 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ZFP90Q8TF47 636 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PIH1D2Q8WWB5 315 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 CACNG8Q8WXS5 425 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 NAT6Q93015 286 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 TMEM230Q96A57 120 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ISOC2Q96AB3 205 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SGTBQ96EQ0 304 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SMIM10Q96HG1 83 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 DNAJC1Q96KC8 554 aaKnown RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 RNF145Q96MT1 663 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 OPALINQ96PE5 141 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SLC25A2Q9BXI2 301 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 UBE2ZQ9H832 354 aaPredicted RBP1.06□□□□□ -2.24
USP3-209ENST00000558925 FANCEQ9HB96 536 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SLC39A1Q9NY26 324 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 NYAP2Q9P242 653 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 DDX19BQ9UMR2 479 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 KPTNQ9Y664 436 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 KCNE3Q9Y6H6 103 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 COMMD3-BMI1R4GMX3 469 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 AK9Q5TCS8 1911 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 ASTN1O14525 1302 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PCDH11XQ9BZA7 1347 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 SYNRGQ9UMZ2 1314 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 MAPK8IP3Q9UPT6 1336 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 PLEKHG2Q9H7P9 1386 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 KIF27Q86VH2 1401 aa1.06□□□□□ -2.24
USP3-209ENST00000558925 A0A096LNJ9 63 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SMIM26A0A096LP01 95 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 IGHV3-74A0A0B4J1X5 117 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 IGHV5-51A0A0C4DH38 117 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 IGHV3-66A0A0C4DH42 116 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 IGKV1-8A0A0C4DH67 115 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 A0A1B0GVX0 72 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 A0A1W2PPV4 95 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 A0A1W2PRD5 423 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 NKX2-6A6NCS4 301 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SLC22A20A6NK97 555 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TRIM49D1C9J1S8 452 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ANKRD63C9JTQ0 380 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ZNF701M0R085 212 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 PES1O00541 588 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 RTL8CO15255 209 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 MPDU1O75352 247 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 FARS2O95363 451 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 FGFR1OPO95684 399 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 OTCP00480 354 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CATP04040 527 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 BCHEP06276 602 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 KLK1P06870 262 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CRYGCP07315 174 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CD3GP09693 182 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ZDHHC11BP0C7U3 371 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 STAG3L2P0CL84 134 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 PGA5P0DJD9 388 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ERGP11308 486 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 PRKACAP17612 351 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 OMGP23515 440 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 F2RP25116 425 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CD70P32970 193 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 DRD3P35462 400 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 RPS9P46781 194 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 CSNK1A1P48729 337 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 FABP6P51161 128 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms