RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PIGKQ92643 395 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PMEPA1Q969W9 287 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SLC25A28Q96A46 364 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ZBTB8AQ96BR9 441 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 ARL5BQ96KC2 179 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 FOXN4Q96NZ1 517 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SPSB2Q99619 263 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SLC25A21Q9BQT8 299 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 UQCC2Q9BRT2 126 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PTGES2Q9H7Z7 377 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 BEX1Q9HBH7 125 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 DCAF16Q9NXF7 216 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 UBQLN2Q9UHD9 624 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 GPN3Q9UHW5 284 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-206ENST00000558338 PCDHB10Q9UN67 800 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 HDGFL3Q9Y3E1 203 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 SIT1Q9Y3P8 196 aa6.49□□□□□ -1.37
VPS13C-206ENST00000558338 LINC00862A6NCI5 91 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF878C9JN71 531 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 M0R233 179 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 SLC22A5O76082 557 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR2A4O95047 310 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 FGF5P12034 268 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 ANXA7P20073 488 aaKnown RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 IL11P20809 199 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 LAP3P28838 519 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 BDKRB2P30411 391 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 BIDP55957 195 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 RAB14P61106 215 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 MYBPHQ13203 477 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 EIF3IQ13347 325 aaKnown RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 IL11RAQ14626 422 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 FAM189A2Q15884 450 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 GLYATL3Q5SZD4 288 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 PHF19Q5T6S3 580 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 FAM69BQ5VUD6 431 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 PEAR1Q5VY43 1037 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR5M10Q6IEU7 315 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 TMEM81Q6P7N7 255 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 LRFN4Q6PJG9 635 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 ARSKQ6UWY0 536 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 Q6ZTK2 550 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 FTMTQ8N4E7 242 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 JAGN1Q8N5M9 183 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 UXS1Q8NBZ7 420 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF680Q8NEM1 530 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR2M3Q8NG83 312 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR4K17Q8NGC6 315 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR11H4Q8NGC9 324 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR2AJ1Q8NGZ0 328 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 SAP25Q8TEE9 199 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 C11orf40Q8WZ69 217 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 EDAQ92838 391 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 SLAMF6Q96DU3 332 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 SPACA9Q96E40 222 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 OR2A7Q96R45 310 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 SEC22CQ9BRL7 303 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 DEFB126Q9BYW3 111 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 ALX4Q9H161 411 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 APMAPQ9HDC9 416 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 MYOZ1Q9NP98 299 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 RAB22AQ9UL26 194 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 POLR1DQ9Y2S0 133 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 MAB21L2Q9Y586 359 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 B3GALT1Q9Y5Z6 326 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 CEP290O15078 2479 aa6.48□□□□□ -1.37
VPS13C-206ENST00000558338 TNRC6BQ9UPQ9 1833 aaKnown RBP6.48□□□□□ -1.37
VPS13C-206ENST00000558338 LOC102725191A0A1B0GVB3 256 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 A0A1W2PQM1 296 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 TMEM200CA6NKL6 621 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 H3BML4 177 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 H3BSH0 61 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 PYCARD-AS1I3L0S3 204 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 CDK2AP1O14519 115 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 LDLRAD4O15165 306 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 SIGLEC6O43699 453 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 TLX3O43711 291 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-206ENST00000558338 WISP1O95388 367 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 TIAF1O95411 115 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 PMS2P2O95744 297 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 CYB5AP00167 134 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 PTGDSP41222 190 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 GSK3AP49840 483 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 SELENOPP49908 381 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 DUSP3P51452 185 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-206ENST00000558338 EFNB2P52799 333 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 GMFBP60983 142 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 FMODQ06828 376 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 TRA2AQ13595 282 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS13C-206ENST00000558338 MEF2DQ14814 521 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 EXT1Q16394 746 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 LGALSLQ3ZCW2 172 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-206ENST00000558338 LINC01559Q495D7 138 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 ESCO2Q56NI9 601 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 CLLU1Q5K131 121 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 PMS2CLQ68D20 193 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 ASPHD2Q6ICH7 369 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 C16orf47Q6ZP98 133 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-206ENST00000558338 ZNF627Q7L945 461 aa6.47□□□□□ -1.37
VPS13C-206ENST00000558338 SLC36A1Q7Z2H8 476 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms