RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HIVEP1P15822 2718 aa11.68□□□□□ -0.54
SHMT2-228ENST00000557302 A0A1W2PPW3 197 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 M0R129 80 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 TLX2O43763 284 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-228ENST00000557302 NDUFS7O75251 213 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 NGFP01138 241 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 DBHP09172 617 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF250P15622 560 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 SLC2A5P22732 501 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 POLR2IP36954 125 aaKnown RBP11.67□□□□□ -0.54
SHMT2-228ENST00000557302 RGS6P49758 472 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 PPOXP50336 477 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 PPP1CBP62140 327 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 APOFQ13790 326 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF718Q3SXZ3 478 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 SPATA46Q5T0L3 261 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 ZBTB49Q6ZSB9 765 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 DCXRQ7Z4W1 244 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 LRP11Q86VZ4 500 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 TCEANCQ8N8B7 351 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 WFDC11Q8NEX6 87 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 OR6N2Q8NGY6 317 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 TMEM163Q8TC26 289 aa11.67□□□□□ -0.54
SHMT2-228ENST00000557302 VRK1Q99986 396 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-228ENST00000557302 PNRC2Q9NPJ4 139 aaKnown RBP11.67□□□□□ -0.54
SHMT2-228ENST00000557302 IGLV3-9A0A075B6K5 115 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 H3BSA7 217 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 J3QW42 95 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 M0R233 179 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 CLPTM1O96005 669 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 PSKH1P11801 424 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 TUBG1P23258 451 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 GCH1P30793 250 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 NUDT6P53370 316 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 CDC42P60953 191 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 EIF2B1Q14232 305 aaKnown RBP11.66□□□□□ -0.54
SHMT2-228ENST00000557302 RCN1Q15293 331 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 MOGQ16653 247 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 NKPD1Q17RQ9 610 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 LCN1P1Q5VSP4 162 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 SHFQ7M4L6 423 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 DPY19L4Q7Z388 723 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 TGIF2LYQ8IUE0 185 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 TIGD4Q8IY51 512 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 OR10S1Q8NGN2 331 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 SLC25A40Q8TBP6 338 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 SPTSSAQ969W0 71 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 MARS2Q96GW9 593 aaKnown RBP11.66□□□□□ -0.54
SHMT2-228ENST00000557302 COG8Q96MW5 612 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 IL4I1Q96RQ9 567 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 OR2J1Q9GZK6 312 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 RAB1BQ9H0U4 201 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 TUBG2Q9NRH3 451 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 SLCO1C1Q9NYB5 712 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 H2AFY2Q9P0M6 372 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-228ENST00000557302 MYEF2Q9P2K5 600 aaKnown RBP11.66□□□□□ -0.54
SHMT2-228ENST00000557302 GPR160Q9UJ42 338 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 NF1P21359 2839 aa11.66□□□□□ -0.54
SHMT2-228ENST00000557302 ARFGEF3Q5TH69 2177 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 F5H5K5 113 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 SELENOFO60613 162 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 IGHV3-13P01766 116 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ERCC1P07992 297 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ADRA2AP08913 450 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ANPEPP15144 967 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 NAA10P41227 235 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ALDH3B1P43353 468 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 EFNA4P52798 201 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 TPTEP56180 551 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 EFNB1P98172 346 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 MAD2L1BPQ15013 274 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 TAF13Q15543 124 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 TRIP10Q15642 601 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 KRTAP27-1Q3LI81 207 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ZIK1Q3SY52 487 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 NXNL2Q5VZ03 156 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 MBNL2Q5VZF2 373 aaKnown RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ZNF454Q8N9F8 522 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 OR5L1Q8NGL2 311 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 OR8J1Q8NGP2 316 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 KLF14Q8TD94 323 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 ST7LQ8TDW4 575 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 SNX33Q8WV41 574 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 APOBEC3DQ96AK3 386 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 SLAMF6Q96DU3 332 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 Q96MF0 132 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 SORCS2Q96PQ0 1159 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 TEAD3Q99594 435 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 SLC29A1Q99808 456 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 COPS4Q9BT78 406 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 MS4A5Q9H3V2 200 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 CENPMQ9NSP4 180 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 DDX28Q9NUL7 540 aaKnown RBP11.65□□□□□ -0.54
SHMT2-228ENST00000557302 TAAR3PQ9P1P4 343 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 F8P00451 2351 aa11.65□□□□□ -0.54
SHMT2-228ENST00000557302 CCDC182A6NF36 153 aa11.64□□□□□ -0.55
SHMT2-228ENST00000557302 SLC22A31A6NKX4 558 aa11.64□□□□□ -0.55
SHMT2-228ENST00000557302 ZNF878C9JN71 531 aa11.64□□□□□ -0.55
SHMT2-228ENST00000557302 M0R135 149 aa11.64□□□□□ -0.55
SHMT2-228ENST00000557302 SSX4O60224 188 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms